RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA929924" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929924 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29337324 29337324 PRJNA929924_P_NODE_14369_length_175_cov_1.531746_g14206_i0 PRJNA929924 14369 175 1.531746 2.6805555 Mesobacillus 2675231 Bacteria Bacteria 79 9.33e-18   NR WP_046523009.1 1408103 g14206 i0 83.7 1.68 49 8 84 0 2 148 17 65 WP_046523009.1 CsbD family protein [Mesobacillus campisalis] diamond 294 79 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Mesobacillus Mesobacillus campisalis
30593553 30593553 PRJNA929924_S_NODE_5513_length_180_cov_1.300699_g5469_i0 PRJNA929924 5513 180 1.300699 2.3412582 Lactiplantibacillus plantarum 1590 Bacteria Bacteria 86.3 1.58e-20   NR WP_229963743.1 1590 g5469 i0 95.9 0.816666666666667 49 2 81.7 0 180 34 2 50 WP_229963743.1 hypothetical protein [Lactiplantibacillus plantarum] diamond 147 86.3 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;