RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA929924" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929924 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30435986 30435986 PRJNA929924_P_NODE_16173_length_166_cov_1.521368_g16010_i0 PRJNA929924 16173 166 1.521368 2.52547088 Prauserella rugosa 43354 Bacteria Bacteria 105 4.11e-25   NR WP_030531514.1 43354 g16010 i0 89.1 0.993975903614458 55 6 99.4 0 1 165 162 216 WP_030531514.1 hypothetical protein [Prauserella rugosa] diamond 165 105 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella rugosa
32111355 32111355 PRJNA929924_P_NODE_14078_length_178_cov_1.519380_g13915_i0 PRJNA929924 14078 178 1.51938 2.7044964 uncultured Corynebacterium sp. 159447 Bacteria Bacteria 112 1.35e-27   NR WP_288812924.1 159447 g13915 i0 98.3 0.97752808988764 58 1 97.8 0 3 176 292 349 WP_288812924.1 alpha/beta hydrolase [uncultured Corynebacterium sp.] diamond 174 112 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium uncultured Corynebacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;