RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA929924" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929924 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27404344 27404344 PRJNA929924_P_NODE_16923_length_165_cov_0.896552_g16760_i0 PRJNA929924 16923 165 0.896552 1.4793108 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 100 7.879999999999999e-23   NR HZS52835.1 2212468 g16760 i0 87 1.96363636363636 54 7 98.2 0 3 164 461 514 HZS52835.1 error-prone DNA polymerase [Bryobacteraceae bacterium] diamond 324 100 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28509324 28509324 PRJNA929924_P_NODE_15387_length_168_cov_0.873950_g15224_i0 PRJNA929924 15387 168 0.87395 1.468236 Acidobacteriota bacterium 1978231 Bacteria Bacteria 88.2 8.18e-21   NR MBS1835797.1 1978231 g15224 i0 89.1 0.982142857142857 55 6 98.2 0 2 166 39 93 MBS1835797.1 roadblock/LC7 domain-containing protein [Acidobacteriota bacterium] diamond 165 88.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32403217 32403217 PRJNA929924_P_NODE_13999_length_179_cov_1.446154_g13836_i0 PRJNA929924 13999 179 1.446154 2.58861566 Pseudomonadati 3379134 Bacteria Bacteria 96.3 2.0200000000000003e-21   NR HTM47052.1 2212468 g13836 i0 70.7 2.91620111731844 58 17 97.2 0 4 177 425 482 HTM47052.1 PQQ-dependent dehydrogenase, methanol/ethanol family [Bryobacteraceae bacterium] diamond 522 96.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32617330 32617330 PRJNA929924_P_NODE_17260_length_164_cov_0.904348_g17097_i0 PRJNA929924 17260 164 0.904348 1.48313072 Acidobacteriota bacterium 1978231 Bacteria Bacteria 100 1.69e-23   NR MBS1833718.1 1978231 g17097 i0 83.3 0.98780487804878 54 9 98.8 0 2 163 57 110 MBS1833718.1 TerC/Alx family metal homeostasis membrane protein [Acidobacteriota bacterium] diamond 162 100 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;