RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA929924" and tax_kingdom = "Fungi"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA929924 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29014785 29014785 PRJNA929924_P_NODE_14248_length_176_cov_2.078740_g14085_i0 PRJNA929924 14248 176 2.07874 3.6585824 Vanrija pseudolonga 143232 Fungi Fungi 90.9 7.12e-21   NR XP_062625879.1 143232 g14085 i0 75.9 0.988636363636364 58 14 98.9 0 176 3 98 155 XP_062625879.1 uncharacterized protein LOC62_02G003362 [Vanrija pseudolonga] diamond 174 90.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Vanrija Vanrija pseudolonga
29235596 29235596 PRJNA929924_P_NODE_15449_length_168_cov_0.873950_g15286_i0 PRJNA929924 15449 168 0.87395 1.468236 Tubulinosema ratisbonensis 291195 Fungi Fungi 75.5 5.6e-16   NR RVD91792.1 291195 g15286 i0 100 0.75 42 0 75 0 25 150 33 74 RVD91792.1 hypothetical protein TUBRATIS_17410 [Tubulinosema ratisbonensis] diamond 126 75.5 1 Eukaryota Opisthokonta Fungi Microsporidia     Tubulinosematidae Tubulinosema Tubulinosema ratisbonensis
32869182 32869182 PRJNA929924_P_NODE_16260_length_166_cov_0.888889_g16097_i0 PRJNA929924 16260 166 0.888889 1.47555574 Irpex lacteus 5319 Fungi Fungi 87 8.64e-21   NR KAI0821020.1 5319 g16097 i0 81.5 0.975903614457831 54 10 97.6 0 164 3 29 82 KAI0821020.1 hypothetical protein BC629DRAFT_1457623 [Irpex lacteus] diamond 162 87 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Irpicaceae Irpex Irpex lacteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;