RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA929924" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA929924 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29456176 29456176 PRJNA929924_P_NODE_15670_length_168_cov_0.873950_g15507_i0 PRJNA929924 15670 168 0.87395 1.468236 Gemmataceae bacterium 2052164 Bacteria Bacteria 94 2.6099999999999994e-23   NR MSU77609.1 2052164 g15507 i0 74.5 0.982142857142857 55 14 98.2 0 2 166 6 60 MSU77609.1 hypothetical protein [Gemmataceae bacterium] diamond 165 94 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
31257186 31257186 PRJNA929924_P_NODE_12735_length_192_cov_1.342657_g12572_i0 PRJNA929924 12735 192 1.342657 2.57790144 Planctomycetota bacterium 2026780 Bacteria Bacteria 86.7 6.48e-18   NR MEK6701863.1 2026780 g12572 i0 68.3 5.046875 63 19 96.9 1 1 186 337 399 MEK6701863.1 HlyD family efflux transporter periplasmic adaptor subunit [Planctomycetota bacterium] diamond 969 86.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31288740 31288740 PRJNA929924_P_NODE_15395_length_168_cov_0.873950_g15232_i0 PRJNA929924 15395 168 0.87395 1.468236 Planctomycetota bacterium 2026780 Bacteria Bacteria 88.6 4.17e-20   NR MEK6702762.1 2026780 g15232 i0 80 0.982142857142857 55 11 98.2 0 166 2 69 123 MEK6702762.1 ATP synthase F1 subunit delta [Planctomycetota bacterium] diamond 165 88.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;