RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA929922" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA929922 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27790270 27790270 PRJNA929922_P_NODE_145244_length_244_cov_0.900585_g144704_i0 PRJNA929922 145244 244 0.900585 2.1974274 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 48.1 4.93e-4   NR XP_001427897.1 5888 g144704 i0 45.8 1.18032786885246 48 26 59 0 26 169 281 328 XP_001427897.1 uncharacterized protein GSPATT00005249001 [Paramecium tetraurelia] diamond 288 48.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
29172505 29172505 PRJNA929922_S_NODE_43169_length_283_cov_1.376190_g42945_i0 PRJNA929922 43169 283 1.37619 3.8946177 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00296   NR TNV85627.1 5974 g42945 i0 32.6 0.487632508833922 46 31 48.8 0 60 197 2 47 TNV85627.1 hypothetical protein FGO68_gene8555 [Halteria grandinella] diamond 138 44.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
29361813 29361813 PRJNA929922_P_NODE_160589_length_241_cov_0.916667_g160049_i0 PRJNA929922 160589 241 0.916667 2.20916747 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 63.2 2.38e-9   NR XP_001020625.2 312017 g160049 i0 52.3 0.809128630705394 65 31 80.9 0 196 2 343 407 XP_001020625.2 ABC transporter C family protein [Tetrahymena thermophila SB210] diamond 195 63.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29993435 29993435 PRJNA929922_P_NODE_144271_length_244_cov_0.900585_g143731_i0 PRJNA929922 144271 244 0.900585 2.1974274 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 73.2 6.91e-13   NR XP_001016968.2 312017 g143731 i0 82.5 0.491803278688525 40 7 49.2 0 242 123 62 101 XP_001016968.2 tetratricopeptide repeat protein [Tetrahymena thermophila SB210] diamond 120 73.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31193570 31193570 PRJNA929922_P_NODE_135435_length_246_cov_0.890173_g134895_i0 PRJNA929922 135435 246 0.890173 2.18982558 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 53.5 2.82e-6   NR KRX04705.1 266149 g134895 i0 50 0.634146341463415 52 26 63.4 0 2 157 61 112 KRX04705.1 Ankyrin repeat-containing domain [Pseudocohnilembus persalinus] diamond 156 53.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31320387 31320387 PRJNA929922_P_NODE_146895_length_244_cov_0.900585_g146355_i0 PRJNA929922 146895 244 0.900585 2.1974274 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 149 7.17e-40   NR CDW71371.1 5949 g146355 i0 85.2 1.99180327868852 81 12 99.6 0 2 244 480 560 CDW71371.1 intraflagellar transport protein 80 homolog [Stylonychia lemnae] diamond 486 149 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;