RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA929922" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929922 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12733443 12733443 PRJNA929922_S_NODE_50_length_2447_cov_66.820135_g16_i0 PRJNA929922 50 2447 66.820135 1635.08870345 Moloney murine leukemia virus 11801 Viruses Viruses 1295 0   NR NP_057933.2 11801 g16 i0 97.6 2.42378422558235 659 16 80.8 0 2305 329 677 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5931 1295 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27000144 27000144 PRJNA929922_P_NODE_70982_length_290_cov_1.202765_g70442_i0 PRJNA929922 70982 290 1.202765 3.4880185 root 1 Root_unresolved Root_unresolved 43.1 0.0422   NR AKN05841.1 11676 g70442 i0 44.7 1.42758620689655 38 20 39.3 1 148 35 158 194 AKN05841.1 gag protein, partial [Human immunodeficiency virus 1] diamond 414 43.5 0.990804597701149 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
27783238 27783238 PRJNA929922_P_NODE_165944_length_231_cov_2.886076_g165404_i0 PRJNA929922 165944 231 2.886076 6.66683556 Moloney murine leukemia virus 11801 Viruses Viruses 123 1.6e-30   NR NP_057933.2 11801 g165404 i0 100 0.805194805194805 62 0 80.5 0 230 45 1274 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 186 123 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30158144 30158144 PRJNA929922_P_NODE_33512_length_363_cov_2.800000_g32972_i0 PRJNA929922 33512 363 2.8 10.164 Gammaretrovirus 153135 Viruses Viruses 251 9.77e-75   NR ARB03489.1 11786 g32972 i0 97.5 10.9090909090909 120 3 99.2 0 361 2 781 900 ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 3960 253 0.992094861660079 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30316882 30316882 PRJNA929922_P_NODE_36572_length_354_cov_2.295374_g36032_i0 PRJNA929922 36572 354 2.295374 8.12562396 Gammaretrovirus 153135 Viruses Viruses 220 8.720000000000001e-64   NR NP_040333.1 11795 g36032 i0 94.6 4.74576271186441 112 6 94.9 0 354 19 529 640 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 1680 222 0.990990990990991 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31130465 31130465 PRJNA929922_P_NODE_28635_length_380_cov_2.973941_g28095_i0 PRJNA929922 28635 380 2.973941 11.3009758 Gammaretrovirus murleu 3428959 Viruses Viruses 258 1.1e-81   NR 8WUS_E 11801 g28095 i0 99.2 3.97894736842105 126 1 99.5 0 379 2 251 376 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1512 258 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31232445 31232445 PRJNA929922_P_NODE_122455_length_248_cov_0.880000_g121915_i0 PRJNA929922 122455 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 49.7 1.41e-4   NR NP_612577.1 10640 g121915 i0 43.5 2.17741935483871 46 26 55.6 0 11 148 585 630 NP_612577.1 Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease; Reverse transcriptase] [Carnation etched ring virus] diamond 540 49.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus incidianthi
31257164 31257164 PRJNA929922_P_NODE_149095_length_243_cov_1.311765_g148555_i0 PRJNA929922 149095 243 1.311765 3.18758895 Dioscorea nummularia-associated virus 2303485 Viruses Viruses 102 2.85e-23   NR YP_009553219.1 2303485 g148555 i0 66.7 0.962962962962963 78 25 95.1 1 243 13 1336 1413 YP_009553219.1 ORF3 [Dioscorea nummularia-associated virus] diamond 234 102 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Dioscovirus Dioscovirus dioscoreae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;