RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA929922" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA929922 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27941032 27941032 PRJNA929922_S_NODE_59305_length_254_cov_1.027624_g59081_i0 PRJNA929922 59305 254 1.027624 2.61016496 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.27e-5   NR SBT59076.1 864142 g59081 i0 56.1 0.484251968503937 41 18 48.4 0 133 11 14 54 SBT59076.1 STP1 protein [Plasmodium ovale wallikeri] diamond 123 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
28824733 28824733 PRJNA929922_P_NODE_3928_length_726_cov_2.231240_g3446_i0 PRJNA929922 3928 726 2.23124 16.1988024 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 82 1.18e-15   NR SBT56012.1 864142 g3446 i0 72.4 0.471074380165289 58 16 24 0 230 403 82 139 SBT56012.1 hypothetical protein POVWA2_071070 [Plasmodium ovale wallikeri] diamond 342 82 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
29014769 29014769 PRJNA929922_P_NODE_28488_length_381_cov_1.418831_g27948_i0 PRJNA929922 28488 381 1.418831 5.40574611 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 61.6 4.52e-8   NR SBT57149.1 864142 g27948 i0 55.1 0.385826771653543 49 22 38.6 0 357 211 972 1020 SBT57149.1 STP1 protein [Plasmodium ovale wallikeri] diamond 147 61.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
30877975 30877975 PRJNA929922_P_NODE_3374_length_772_cov_1.216023_g2906_i0 PRJNA929922 3374 772 1.216023 9.38769756 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 73.9 7.37e-11   NR SBT57149.1 864142 g2906 i0 73.9 0.178756476683938 46 12 17.9 0 697 560 972 1017 SBT57149.1 STP1 protein [Plasmodium ovale wallikeri] diamond 138 73.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
31770320 31770320 PRJNA929922_P_NODE_67857_length_294_cov_1.886878_g67317_i0 PRJNA929922 67857 294 1.886878 5.54742132 root 1 Root_unresolved Root_unresolved 45.4 0.00227   NR XP_664835.1 353151 g67317 i0 48 1.52040816326531 50 26 51 0 152 3 63 112 XP_664835.1 LacOPZ-alpha peptide from pUC9 [Cryptosporidium hominis TU502] diamond 447 45.8 0.991266375545852 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;