RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA929922" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA929922 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27600895 27600895 PRJNA929922_P_NODE_118504_length_249_cov_0.875000_g117964_i0 PRJNA929922 118504 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 45.1 0.00286   NR WP_394292706.1 859 g117964 i0 53.7 3.96385542168675 41 19 49.4 0 75 197 96 136 WP_394292706.1 endonuclease/exonuclease/phosphatase family protein [Fusobacterium necrophorum] diamond 987 45.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
28895113 28895113 PRJNA929922_P_NODE_7548_length_574_cov_1.315369_g7025_i0 PRJNA929922 7548 574 1.315369 7.55021806 Bacteria 2 Bacteria Bacteria 80.9 6.19e-14   NR WP_314013473.1 157687 g7025 i0 59.7 1.74564459930314 67 27 35 0 555 355 750 816 WP_314013473.1 DNA cytosine methyltransferase [Leptotrichia wadei] diamond 1002 81.6 0.991421568627451 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
30783184 30783184 PRJNA929922_P_NODE_119614_length_249_cov_0.875000_g119074_i0 PRJNA929922 119614 249 0.875 2.17875 Fusobacterium varium 856 Bacteria Bacteria 168 4.56e-51   NR WP_349169431.1 856 g119074 i0 100 1 83 0 100 0 249 1 35 117 WP_349169431.1 hypothetical protein [Fusobacterium varium] diamond 249 168 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;