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contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA929522" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA929522 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4733772 4733772 PRJNA929522_S_NODE_2364_length_433_cov_8.280556_g2294_i0 PRJNA929522 2364 433 8.280556 35.85480748 Rhabditida 6236 Nematoda Nematoda 174 1.0699999999999996e-52   NR ULU10924.1 6238 g2294 i0 82.6 43.8360277136259 109 19 75.5 0 330 4 47 155 ULU10924.1 hypothetical protein L3Y34_014857 [Caenorhabditis briggsae] diamond 18981 175 0.994285714285714 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
6008589 6008589 PRJNA929522_S_NODE_2865_length_394_cov_2.246106_g2795_i0 PRJNA929522 2865 394 2.246106 8.84965764 Rhabditida 6236 Nematoda Nematoda 143 4.72e-38   NR QQD79810.1 34510 g2795 i0 55.6 10.7131979695431 133 46 91.4 4 363 4 16 148 QQD79810.1 calreticulin [Heterodera avenae] diamond 4221 144 0.993055555555556 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera avenae
7631561 7631561 PRJNA929522_S_NODE_626_length_791_cov_2.204735_g572_i0 PRJNA929522 626 791 2.204735 17.43945385 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.8 3.99e-7   NR XP_024503545.1 34506 g572 i0 32.4 3.63716814159292 136 76 48.2 6 104 484 53 181 XP_024503545.1 BTB/POZ-like domain and Coagulation factor 5/8 C-terminal type domain and Galactose-binding domain-like and BTB/POZ fold domain and BTB/Kelch-associated domain and BTB/POZ domain-containing protein [Strongyloides ratti] diamond 2877 63.2 0.993670886075949 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
27498975 27498975 PRJNA929522_S_NODE_8063_length_256_cov_1.262295_g7993_i0 PRJNA929522 8063 256 1.262295 3.2314752 Mesorhabditis belari 2138241 Nematoda Nematoda 79.7 4.3e-15   NR CAJ0920049.1 2138241 g7993 i0 74.5 1.2890625 55 14 64.5 0 256 92 685 739 CAJ0920049.1 unnamed protein product, partial [Mesorhabditis belari] diamond 330 79.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
27783204 27783204 PRJNA929522_S_NODE_2784_length_400_cov_1.874618_g2714_i0 PRJNA929522 2784 400 1.874618 7.498472 Strongyloides ratti 34506 Nematoda Nematoda 82 2.15e-15   NR XP_024508241.1 34506 g2714 i0 41.8 0.915 122 63 87 3 44 391 1 120 XP_024508241.1 Guanine nucleotide-binding protein G(k) subunit alpha [Strongyloides ratti] diamond 366 82 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
27909047 27909047 PRJNA929522_S_NODE_6325_length_283_cov_1.095238_g6255_i0 PRJNA929522 6325 283 1.095238 3.09952354 Acanthocheilonema viteae 6277 Nematoda Nematoda 53.5 9.87e-6   NR KAL3989462.1 6277 g6255 i0 50.9 1.12367491166078 53 26 56.2 0 159 1 184 236 KAL3989462.1 Kinesin motor domain family protein [Acanthocheilonema viteae] diamond 318 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
28004298 28004298 PRJNA929522_S_NODE_9385_length_245_cov_1.343023_g9315_i0 PRJNA929522 9385 245 1.343023 3.29040635 Gongylonema pulchrum 637853 Nematoda Nematoda 58.2 8.98e-9   NR VDK47145.1 637853 g9315 i0 50 1.84897959183673 50 25 61.2 0 244 95 18 67 VDK47145.1 unnamed protein product [Gongylonema pulchrum] diamond 453 58.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
28674254 28674254 PRJNA929522_S_NODE_7867_length_259_cov_1.236559_g7797_i0 PRJNA929522 7867 259 1.236559 3.20268781 Onchocercidae 6296 Nematoda Nematoda 67.4 5.45e-11   NR XP_042936552.1 6279 g7797 i0 46.8 3.68339768339768 79 37 90.3 4 2 235 5 79 XP_042936552.1 Uncharacterized protein BM_BM1860 [Brugia malayi] diamond 954 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
30505996 30505996 PRJNA929522_S_NODE_8133_length_255_cov_1.269231_g8063_i0 PRJNA929522 8133 255 1.269231 3.23653905 Metazoa 33208 Nematoda Nematoda 119 5.2e-29   NR KAL1227996.1 6334 g8063 i0 61.4 22.5529411764706 83 32 97.6 0 7 255 1016 1098 KAL1227996.1 ATP-dependent RNA helicase [Trichinella spiralis] diamond 5751 119 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
30727041 30727041 PRJNA929522_S_NODE_1914_length_480_cov_2.368550_g1844_i0 PRJNA929522 1914 480 2.36855 11.36904 Rhabditida 6236 Nematoda Nematoda 93.2 3.81e-19   NR NP_001369965.1 6239 g1844 i0 77.1 3.70625 48 11 30 0 2 145 298 345 NP_001369965.1 Peptidase C1A papain C-terminal domain-containing protein [Caenorhabditis elegans] diamond 1779 93.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
30821855 30821855 PRJNA929522_S_NODE_3534_length_358_cov_1.059649_g3464_i0 PRJNA929522 3534 358 1.059649 3.7935434200000002 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 124 2.1000000000000002e-30   NR KAI1725864.1 166010 g3464 i0 52.9 5.99162011173184 119 55 98.9 1 4 357 527 645 KAI1725864.1 anticodon binding domain-containing protein [Ditylenchus destructor] diamond 2145 125 0.992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
31169200 31169200 PRJNA929522_S_NODE_4595_length_320_cov_1.595142_g4525_i0 PRJNA929522 4595 320 1.595142 5.1044544 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 130 6.149999999999999e-35   NR KAH7715620.1 70226 g4525 i0 63.5 29.109375 85 29 79.7 1 21 275 165 247 KAH7715620.1 ISP-1 protein [Aphelenchoides avenae] diamond 9315 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
31352133 31352133 PRJNA929522_S_NODE_3116_length_379_cov_2.238562_g3046_i0 PRJNA929522 3116 379 2.238562 8.48414998 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 56.6 1.64e-6   NR KAE9546676.1 2598192 g3046 i0 50 0.66490765171504 42 21 33.2 0 2 127 229 270 KAE9546676.1 hypothetical protein FO519_010112, partial [Halicephalobus sp. NKZ332] diamond 252 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
31833425 31833425 PRJNA929522_S_NODE_5617_length_296_cov_3.107623_g5547_i0 PRJNA929522 5617 296 3.107623 9.19856408 Metazoa 33208 Nematoda Nematoda 63.5 3.11e-9   NR KRZ67201.1 268474 g5547 i0 41.9 4.51013513513514 93 49 90.2 2 271 5 58 149 KRZ67201.1 Cathepsin B-like cysteine proteinase, partial [Trichinella papuae] diamond 1335 63.9 0.993740219092332 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae
31889701 31889701 PRJNA929522_S_NODE_1677_length_511_cov_3.363014_g1607_i0 PRJNA929522 1677 511 3.363014 17.18500154 Steinernema hermaphroditum 289476 Nematoda Nematoda 154 9.43e-40   NR KAK0406416.1 289476 g1607 i0 45.2 3.67514677103718 157 86 92.2 0 7 477 700 856 KAK0406416.1 hypothetical protein QR680_018562 [Steinernema hermaphroditum] diamond 1878 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
32055016 32055016 PRJNA929522_S_NODE_2138_length_454_cov_2.178478_g2068_i0 PRJNA929522 2138 454 2.178478 9.89029012 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 1.05e-28   NR KAH7729322.1 70226 g2068 i0 53.5 6.83920704845815 114 46 75.3 3 432 91 7 113 KAH7729322.1 protein synthesis factor [Aphelenchoides avenae] diamond 3105 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
32396124 32396124 PRJNA929522_S_NODE_9199_length_246_cov_2.196532_g9129_i0 PRJNA929522 9199 246 2.196532 5.40346872 Caenorhabditis briggsae 6238 Nematoda Nematoda 58.5 6.48e-8   NR XP_045096311.1 6238 g9129 i0 61.5 3.34146341463415 39 15 47.6 0 244 128 209 247 XP_045096311.1 Protein CBG17829 [Caenorhabditis briggsae] diamond 822 58.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;