RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA928559" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA928559 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6356797 6356797 PRJNA928559_P_NODE_154505_length_283_cov_1.509524_g152936_i0 PRJNA928559 154505 283 1.509524 4.27195292 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 114 5.5e-29   NR AFX73094.1 1260108 g152936 i0 64.5 3.92226148409894 93 33 98.6 0 281 3 118 210 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 1110 114 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta
12732102 12732102 PRJNA928559_P_NODE_129430_length_312_cov_1.899582_g127861_i0 PRJNA928559 129430 312 1.899582 5.92669584 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 166 2.82e-46   NR YP_003540812.1 5778 g127861 i0 97.7 0.836538461538462 87 2 83.7 0 263 3 101 187 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 261 166 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;