RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA928559" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA928559 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11106045 11106045 PRJNA928559_P_NODE_143449_length_295_cov_1.405405_g141880_i0 PRJNA928559 143449 295 1.405405 4.14594475 Candidatus Nitrosotenuis 1825023 Archaea Archaea 124 1.05e-33   NR NDB88989.1 2026795 g141880 i0 66.3 3.93559322033898 98 31 97.6 1 290 3 51 148 NDB88989.1 hypothetical protein [Nitrososphaerota archaeon] diamond 1161 124 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28919436 28919436 PRJNA928559_P_NODE_159428_length_278_cov_1.521951_g157859_i0 PRJNA928559 159428 278 1.521951 4.23102378 Candidatus Nitrosotenuis sp. 2507556 Archaea Archaea 41.2 0.0331   NR TBR07939.1 2507556 g157859 i0 50 0.366906474820144 34 17 36.7 0 144 245 41 74 TBR07939.1 MAG: hypothetical protein EPO62_07445 [Candidatus Nitrosotenuis sp.] diamond 102 41.2 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp.
30277942 30277942 PRJNA928559_P_NODE_188512_length_253_cov_0.866667_g186943_i0 PRJNA928559 188512 253 0.866667 2.19266751 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 107 5.66e-25   NR WP_048188611.1 1603555 g186943 i0 69.8 4.04347826086957 86 21 98.4 3 252 4 1050 1133 WP_048188611.1 beta strand repeat-containing protein [Candidatus Nitrosotenuis cloacae] diamond 1023 107 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;