RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA928559" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA928559 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26707973 26707973 PRJNA928559_P_NODE_219741_length_234_cov_2.664596_g218172_i0 PRJNA928559 219741 234 2.664596 6.23515464 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 56.2 3.05e-7   NR MBQ9899564.1 2053494 g218172 i0 54.5 1.67948717948718 44 20 56.4 0 234 103 169 212 MBQ9899564.1 adenylate kinase [Acholeplasmatales bacterium] diamond 393 56.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium
26961340 26961340 PRJNA928559_P_NODE_193062_length_251_cov_0.876404_g191493_i0 PRJNA928559 193062 251 0.876404 2.19977404 Acholeplasma sp. 33015 Bacteria Bacteria 42.7 0.0414   NR MDY0347116.1 33015 g191493 i0 32.9 0.872509960159363 73 48 86.1 1 18 233 675 747 MDY0347116.1 FtsX-like permease family protein [Acholeplasma sp.] diamond 219 42.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.
27253121 27253121 PRJNA928559_P_NODE_125403_length_317_cov_3.651639_g123834_i0 PRJNA928559 125403 317 3.651639 11.57569563 Bacteria 2 Bacteria Bacteria 44.3 0.024   NR MCI7068902.1 37628 g123834 i0 33.8 1.38170347003155 74 45 66.2 1 44 253 105 178 MCI7068902.1 GHKL domain-containing protein [Mollicutes bacterium] diamond 438 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;