RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA928559" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA928559 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14931231 14931231 PRJNA928559_P_NODE_197852_length_249_cov_0.886364_g196283_i0 PRJNA928559 197852 249 0.886364 2.20704636 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 100 2.65e-22   NR WP_025226212.1 1005039 g196283 i0 63.1 1.01204819277108 84 29 98.8 1 246 1 79 162 WP_025226212.1 S-layer homology domain-containing protein [Fimbriimonas ginsengisoli] diamond 252 100 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
16206465 16206465 PRJNA928559_P_NODE_209893_length_244_cov_0.912281_g208324_i0 PRJNA928559 209893 244 0.912281 2.22596564 Fimbriimonas 1005038 Bacteria Bacteria 104 2.73e-25   NR WP_227625014.1 1005039 g208324 i0 72.7 1.89344262295082 77 20 94.7 1 1 231 189 264 WP_227625014.1 30S ribosomal protein S2 [Fimbriimonas ginsengisoli] diamond 462 105 0.990476190476191 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
27404247 27404247 PRJNA928559_P_NODE_31823_length_582_cov_2.595285_g30293_i0 PRJNA928559 31823 582 2.595285 15.1045587 Armatimonadota bacterium 2033014 Bacteria Bacteria 47 0.0246   NR MEW5884319.1 2033014 g30293 i0 24.8 0.706185567010309 137 103 70.6 0 413 3 171 307 MEW5884319.1 PASTA domain-containing protein [Armatimonadota bacterium] diamond 411 47 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27814784 27814784 PRJNA928559_P_NODE_208704_length_244_cov_1.649123_g207135_i0 PRJNA928559 208704 244 1.649123 4.02386012 Fimbriimonas sp. 1936159 Bacteria Bacteria 48.9 2.41e-4   NR MDR3688278.1 1936159 g207135 i0 42.6 2.49590163934426 61 34 73.8 1 241 62 212 272 MDR3688278.1 ankyrin repeat domain-containing protein [Fimbriimonas sp.] diamond 609 48.9 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
29298512 29298512 PRJNA928559_P_NODE_144609_length_293_cov_5.954545_g143040_i0 PRJNA928559 144609 293 5.954545 17.44681685 Armatimonadota bacterium 2033014 Bacteria Bacteria 52.8 9.55e-7   NR MES2462974.1 2033014 g143040 i0 44.1 0.696245733788396 68 36 67.6 2 259 62 1 68 MES2462974.1 hypothetical protein [Armatimonadota bacterium] diamond 204 52.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29582351 29582351 PRJNA928559_P_NODE_187170_length_253_cov_1.733333_g185601_i0 PRJNA928559 187170 253 1.733333 4.38533249 Armatimonadota bacterium 2033014 Bacteria Bacteria 130 2.43e-33   NR MBS1726118.1 2033014 g185601 i0 70.4 2.91699604743083 81 24 96 0 253 11 374 454 MBS1726118.1 MmgE/PrpD family protein [Armatimonadota bacterium] diamond 738 130 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;