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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA928559" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 12 ✖

bioproject 1

  • PRJNA928559 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13656954 13656954 PRJNA928559_P_NODE_195531_length_250_cov_0.881356_g193962_i0 PRJNA928559 195531 250 0.881356 2.20339 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 68.6 3.11e-11   NR MFU8805234.1 2740543 g193962 i0 51.3 0.936 78 38 93.6 0 9 242 11 88 MFU8805234.1 two-component system sensor histidine kinase NtrB [Bradymonadaceae bacterium] diamond 234 68.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
17481533 17481533 PRJNA928559_P_NODE_204954_length_246_cov_0.901734_g203385_i0 PRJNA928559 204954 246 0.901734 2.21826564 Bradymonadales 1779134 Bacteria Bacteria 122 6.38e-31   NR WP_146958764.1 2600177 g203385 i0 81.2 3.3780487804878 69 13 84.1 0 208 2 1 69 WP_146958764.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Microvenator marinus] diamond 831 122 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
17482918 17482918 PRJNA928559_P_NODE_99854_length_357_cov_1.665493_g98285_i0 PRJNA928559 99854 357 1.665493 5.94581001 Bacteria 2 Bacteria Bacteria 114 5.15e-30   NR OGQ03968.1 1797856 g98285 i0 59.3 11.327731092437 113 40 95 2 341 3 1 107 OGQ03968.1 MAG: 50S ribosomal protein L7/L12 [Deltaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_43_49] diamond 4044 115 0.991304347826087 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_43_49
20379573 20379573 PRJNA928559_P_NODE_94376_length_367_cov_1.326531_g92807_i0 PRJNA928559 94376 367 1.326531 4.86836877 Lujinxingia 2653226 Bacteria Bacteria 178 3.9e-54   NR WP_146981624.1 2600176 g92807 i0 69.2 4.89645776566757 120 37 98.1 0 362 3 77 196 WP_146981624.1 30S ribosomal protein S4 [Lujinxingia vulgaris] diamond 1797 178 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia vulgaris
25479645 25479645 PRJNA928559_P_NODE_3580_length_1548_cov_3.755932_g2941_i0 PRJNA928559 3580 1548 3.755932 58.14182736 Thermodesulfobacteriota 200940 Bacteria Bacteria 305 1.46e-93   NR MBF0351506.1 2024889 g2941 i0 60.3 3.83720930232558 272 106 52.3 2 836 27 26 297 MBF0351506.1 PfaD family polyunsaturated fatty acid/polyketide biosynthesis protein [SAR324 cluster bacterium] diamond 5940 308 0.99025974025974 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
28130420 28130420 PRJNA928559_P_NODE_214145_length_242_cov_1.384615_g212576_i0 PRJNA928559 214145 242 1.384615 3.3507683 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 1973967 Bacteria Bacteria 42.4 0.0499   NR PJB48263.1 1973967 g212576 i0 37.9 0.71900826446281 58 33 68.2 1 63 227 447 504 PJB48263.1 MAG: hypothetical protein CO108_02650 [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12] diamond 174 42.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12
28382816 28382816 PRJNA928559_P_NODE_153786_length_284_cov_1.279621_g152217_i0 PRJNA928559 153786 284 1.279621 3.63412364 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 67.8 1.73e-12   NR MBA2660823.1 2946527 g152217 i0 42 0.855633802816901 81 46 85.6 1 276 34 8 87 MBA2660823.1 KH domain-containing protein [Lujinxingiaceae bacterium] diamond 243 67.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium
28737390 28737390 PRJNA928559_P_NODE_194387_length_250_cov_1.389831_g192818_i0 PRJNA928559 194387 250 1.389831 3.4745775 Bacteria 2 Bacteria Bacteria 53.9 4.3e-6   NR OGQ06361.1 1797856 g192818 i0 40.5 1.896 79 47 94.8 0 248 12 203 281 OGQ06361.1 MAG: hypothetical protein A2712_05585 [Deltaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_43_49] diamond 474 53.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_43_49
30182756 30182756 PRJNA928559_P_NODE_179052_length_260_cov_1.331551_g177483_i0 PRJNA928559 179052 260 1.331551 3.4620326 Microvenator marinus 2600177 Bacteria Bacteria 79 1.91e-15   NR WP_146957651.1 2600177 g177483 i0 52.3 3.09230769230769 86 41 99.2 0 2 259 170 255 WP_146957651.1 PspA/IM30 family protein [Microvenator marinus] diamond 804 79 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
31763182 31763182 PRJNA928559_P_NODE_47097_length_496_cov_2.482270_g45535_i0 PRJNA928559 47097 496 2.48227 12.3120592 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 97.4 5.02e-20   NR PKN53796.1 2013741 g45535 i0 43 0.647177419354839 107 54 63.5 3 324 10 751 852 PKN53796.1 MAG: hypothetical protein CVU56_29970 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 321 97.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
32142896 32142896 PRJNA928559_P_NODE_197318_length_249_cov_0.886364_g195749_i0 PRJNA928559 197318 249 0.886364 2.20704636 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 107 1.85e-25   NR MBA2662702.1 2946527 g195749 i0 61 0.987951807228916 82 32 98.8 0 248 3 76 157 MBA2662702.1 hypothetical protein [Lujinxingiaceae bacterium] diamond 246 107 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium
32522833 32522833 PRJNA928559_P_NODE_214819_length_242_cov_0.923077_g213250_i0 PRJNA928559 214819 242 0.923077 2.23384634 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 89.7 2.97e-20   NR MFU8805295.1 2740543 g213250 i0 48.6 0.892561983471074 72 37 89.3 0 217 2 91 162 MFU8805295.1 hypothetical protein [Bradymonadaceae bacterium] diamond 216 89.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;