RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA928559" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 6 ✖

bioproject 1

  • PRJNA928559 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27821901 27821901 PRJNA928559_P_NODE_4384_length_1414_cov_4.498136_g3634_i0 PRJNA928559 4384 1414 4.498136 63.60364304 root 1 Root_unresolved Root_unresolved 123 4.41e-29   NR HET8689243.1 2213 g3634 i0 65.9 0.386138613861386 88 29 18.7 1 1149 1412 18 104 HET8689243.1 hypothetical protein [Methanosarcina sp.] diamond 546 124 0.991935483870968 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28667167 28667167 PRJNA928559_P_NODE_144547_length_294_cov_0.814480_g142978_i0 PRJNA928559 144547 294 0.81448 2.3945712 Haloferax volcanii 2246 Archaea Archaea 45.1 0.00344   NR WP_144859680.1 2246 g142978 i0 43.8 0.979591836734694 48 23 49 1 61 204 17 60 WP_144859680.1 aminotransferase class V-fold PLP-dependent enzyme, partial [Haloferax volcanii] diamond 288 45.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii
29747433 29747433 PRJNA928559_P_NODE_87150_length_381_cov_1.545455_g85581_i0 PRJNA928559 87150 381 1.545455 5.88818355 root 1 Root_unresolved Root_unresolved 141 3.35e-39   NR WP_011450032.1 2203 g85581 i0 56.7 2.01574803149606 127 45 100 2 1 381 62 178 WP_011450032.1 pseudaminic acid cytidylyltransferase [Methanospirillum hungatei] diamond 768 141 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei
31383730 31383730 PRJNA928559_P_NODE_161336_length_276_cov_1.807882_g159767_i0 PRJNA928559 161336 276 1.807882 4.98975432 Candidatus Methanofastidiosia archaeon 2099674 Archaea Archaea 47 0.00173   NR MDD4281430.1 2099674 g159767 i0 38 1.80434782608696 79 37 85.9 3 268 32 449 515 MDD4281430.1 tetratricopeptide repeat protein [Candidatus Methanofastidiosia archaeon] diamond 498 47 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia       Candidatus Methanofastidiosia archaeon
31605065 31605065 PRJNA928559_P_NODE_119436_length_326_cov_1.320158_g117867_i0 PRJNA928559 119436 326 1.320158 4.30371508 Halonotius pteroides 268735 Archaea Archaea 59.3 1.58e-7   NR WP_133305096.1 268735 g117867 i0 45.5 1.69325153374233 112 52 99.4 5 3 326 920 1026 WP_133305096.1 GLUG motif-containing protein [Halonotius pteroides] diamond 552 59.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius pteroides
31675324 31675324 PRJNA928559_P_NODE_149217_length_288_cov_3.139535_g147648_i0 PRJNA928559 149217 288 3.139535 9.0418608 root 1 Root_unresolved Root_unresolved 110 3.58e-27   NR HET8689265.1 2213 g147648 i0 60 7.91666666666667 95 38 99 0 286 2 12 106 HET8689265.1 hypothetical protein [Methanosarcina sp.] diamond 2280 111 0.990990990990991 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;