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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA927284" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA927284 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9829632 9829632 PRJNA927284_P_NODE_488_length_1158_cov_3.288751_g401_i0 PRJNA927284 488 1158 3.288751 38.08373658 Metazoa 33208 Nematoda Nematoda 331 1.73e-109   NR NP_509939.1 6239 g401 i0 72.7 14.0440414507772 249 63 64.5 2 1039 293 5 248 NP_509939.1 14-3-3-like protein 2 [Caenorhabditis elegans] diamond 16263 334 0.991017964071856 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11105455 11105455 PRJNA927284_P_NODE_6209_length_215_cov_2.145161_g6002_i0 PRJNA927284 6209 215 2.145161 4.61209615 Rhabditida 6236 Nematoda Nematoda 130 3.34e-33   NR KAF8357382.1 54126 g6002 i0 88.7 3.96279069767442 71 8 99.1 0 213 1 77 147 KAF8357382.1 aco-2 [Pristionchus pacificus] diamond 852 131 0.99236641221374 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
18753415 18753415 PRJNA927284_P_NODE_255_length_1575_cov_24.416559_g184_i3 PRJNA927284 255 1575 24.416559 384.56080425 Nematoda 6231 Nematoda Nematoda 247 2.3899999999999995e-73   NR VDP12492.1 241478 g184 i3 39.8 4.26857142857143 342 174 64.6 7 220 1236 52 364 VDP12492.1 unnamed protein product [Soboliphyme baturini] diamond 6723 248 0.995967741935484 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
18753464 18753464 PRJNA927284_P_NODE_995_length_768_cov_3.768606_g861_i0 PRJNA927284 995 768 3.768606 28.94289408 Metazoa 33208 Nematoda Nematoda 308 2.38e-92   NR KAL1235837.1 6337 g861 i0 70 66.59765625 203 61 79.3 0 768 160 650 852 KAL1235837.1 Elongation factor [Trichinella pseudospiralis] diamond 51147 309 0.996763754045307 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
26842280 26842280 PRJNA927284_P_NODE_261_length_1559_cov_24.541176_g184_i4 PRJNA927284 261 1559 24.541176 382.59693384 Nematoda 6231 Nematoda Nematoda 247 2.04e-73   NR VDP12492.1 241478 g184 i4 39.8 4.31237973059654 342 174 65.2 7 1340 324 52 364 VDP12492.1 unnamed protein product [Soboliphyme baturini] diamond 6723 248 0.995967741935484 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
28074185 28074185 PRJNA927284_P_NODE_225_length_1631_cov_23.654182_g184_i0 PRJNA927284 225 1631 23.654182 385.79970842 Nematoda 6231 Nematoda Nematoda 247 3.81e-73   NR VDP12492.1 241478 g184 i0 39.8 3.98773758430411 342 174 62.4 7 1126 110 52 364 VDP12492.1 unnamed protein product [Soboliphyme baturini] diamond 6504 248 0.995967741935484 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
28705887 28705887 PRJNA927284_P_NODE_227_length_1627_cov_23.284105_g184_i1 PRJNA927284 227 1627 23.284105 378.83238835 Nematoda 6231 Nematoda Nematoda 247 3.7200000000000005e-73   NR VDP12492.1 241478 g184 i1 39.8 3.99754148740012 342 174 62.5 7 1126 110 52 364 VDP12492.1 unnamed protein product [Soboliphyme baturini] diamond 6504 248 0.995967741935484 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
29463138 29463138 PRJNA927284_P_NODE_8630_length_163_cov_1.582090_g8423_i0 PRJNA927284 8630 163 1.58209 2.5788067 Metazoa 33208 Nematoda Nematoda 88.6 8.18e-19   NR KHN79434.1 6265 g8423 i0 77.8 4.96932515337423 54 12 99.4 0 2 163 156 209 KHN79434.1 Nicotinamide phosphoribosyltransferase [Toxocara canis] diamond 810 89 0.995505617977528 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
29874061 29874061 PRJNA927284_P_NODE_1251_length_674_cov_3.308527_g1109_i0 PRJNA927284 1251 674 3.308527 22.29947198 Rhabditida 6236 Nematoda Nematoda 104 3e-24   NR KHN79685.1 6265 g1109 i0 52.9 2.95548961424332 87 41 38.7 0 298 558 79 165 KHN79685.1 Lipopolysaccharide-induced tumor necrosis factor-alpha factor -like protein [Toxocara canis] diamond 1992 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30568791 30568791 PRJNA927284_P_NODE_9133_length_154_cov_1.304000_g8926_i0 PRJNA927284 9133 154 1.304 2.00816 Metazoa 33208 Nematoda Nematoda 47 3.57e-4   NR EFP03578.1 31234 g8926 i0 41.2 2.84415584415584 51 30 99.4 0 1 153 367 417 EFP03578.1 CRE-CYP-13B2 protein [Caenorhabditis remanei] diamond 438 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
30853417 30853417 PRJNA927284_P_NODE_254_length_1579_cov_23.834194_g184_i2 PRJNA927284 254 1579 23.834194 376.34192326 Nematoda 6231 Nematoda Nematoda 247 2.45e-73   NR VDP12492.1 241478 g184 i2 39.8 4.25775807473084 342 174 64.4 7 1126 110 52 364 VDP12492.1 unnamed protein product [Soboliphyme baturini] diamond 6723 248 0.995967741935484 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
31067597 31067597 PRJNA927284_P_NODE_2275_length_460_cov_2.733179_g2083_i0 PRJNA927284 2275 460 2.733179 12.5726234 Aphelenchoides besseyi 269767 Nematoda Nematoda 44.3 0.0322   NR KAI6179932.1 269767 g2083 i0 34.2 0.723913043478261 111 46 72.4 7 115 447 45 128 KAI6179932.1 hypothetical protein M3Y98_00664500 [Aphelenchoides besseyi] diamond 333 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
32435063 32435063 PRJNA927284_P_NODE_6859_length_197_cov_2.595238_g6652_i0 PRJNA927284 6859 197 2.595238 5.11261886 Ancylostomatidae 33278 Nematoda Nematoda 109 3.5e-29   NR RCN44164.1 29170 g6652 i0 78.1 6.82233502538071 64 14 97.5 0 6 197 31 94 RCN44164.1 chaperonin GroS [Ancylostoma caninum] diamond 1344 109 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
32490998 32490998 PRJNA927284_P_NODE_3699_length_329_cov_1.940000_g3494_i0 PRJNA927284 3699 329 1.94 6.3826 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 62 1.7e-8   NR KAE9554159.1 2598192 g3494 i0 34.3 1.92401215805471 99 60 87.5 4 329 42 112 208 KAE9554159.1 hypothetical protein FO519_002639 [Halicephalobus sp. NKZ332] diamond 633 62 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
32869019 32869019 PRJNA927284_P_NODE_5040_length_256_cov_2.651982_g4833_i0 PRJNA927284 5040 256 2.651982 6.78907392 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 61.2 1.32e-8   NR CAD5226188.1 6326 g4833 i0 37.7 2.6484375 77 48 90.2 0 2 232 269 345 CAD5226188.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 678 61.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;