RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA927284" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA927284 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27340992 27340992 PRJNA927284_P_NODE_6923_length_196_cov_1.383234_g6716_i0 PRJNA927284 6923 196 1.383234 2.71113864 Oceanobacillus limi 930131 Bacteria Bacteria 71.6 8.83e-13   NR WP_090867954.1 930131 g6716 i0 46.2 0.994897959183674 65 34 99.5 1 2 196 101 164 WP_090867954.1 formylglycine-generating enzyme family protein [Oceanobacillus limi] diamond 195 71.6 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus limi
32237999 32237999 PRJNA927284_P_NODE_78_length_2298_cov_20.235787_g61_i0 PRJNA927284 78 2298 20.235787 465.01838526 Clostridium perfringens 1502 Bacteria Bacteria 224 1.5e-64   NR MDJ8942385.1 1502 g61 i0 72.8 0.785900783289817 151 41 19.7 0 212 664 43 193 MDJ8942385.1 hypothetical protein [Clostridium perfringens] diamond 1806 224 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;