RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA927284" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA927284 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32047905 32047905 PRJNA927284_P_NODE_2658_length_414_cov_4.394805_g2459_i0 PRJNA927284 2658 414 4.394805 18.1944927 Polarella glacialis 89957 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.4e-7   NR CAE8630692.1 89957 g2459 i0 41 0.565217391304348 78 45 55.8 1 373 143 209 286 CAE8630692.1 unnamed protein product, partial [Polarella glacialis] diamond 234 60.5 1 Eukaryota Sar     Dinophyceae Suessiales Suessiaceae Polarella Polarella glacialis
32276747 32276747 PRJNA927284_P_NODE_5818_length_227_cov_1.732323_g5611_i0 PRJNA927284 5818 227 1.732323 3.93237321 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.9 1.23e-18   NR XP_012336428.1 5857 g5611 i0 59.3 12.8986784140969 81 25 96.5 1 222 4 29 109 XP_012336428.1 uncharacterized protein AK88_03388 [Plasmodium fragile] diamond 2928 86.3 0.995365005793743 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium fragile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;