RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA924320" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA924320 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29172254 29172254 PRJNA924320_S_NODE_30889_length_196_cov_2.523810_g30747_i0 PRJNA924320 30889 196 2.52381 4.9466676 Spiroplasma culicicola 216935 Bacteria Bacteria 43.9 0.00762   NR WP_025363548.1 216935 g30747 i0 41.7 0.918367346938776 60 34 90.3 1 18 194 236 295 WP_025363548.1 ABC transporter ATP-binding protein/permease [Spiroplasma culicicola] diamond 180 43.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma culicicola
29803521 29803521 PRJNA924320_S_NODE_53971_length_163_cov_0.894737_g53829_i0 PRJNA924320 53971 163 0.894737 1.45842131 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 51.2 6.79e-6   NR MDD6145100.1 2685873 g53829 i0 51.1 0.828220858895706 45 20 82.8 1 28 162 66 108 MDD6145100.1 aminoacyl-tRNA hydrolase [Mycoplasmataceae bacterium] diamond 135 51.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;