RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA922890" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA922890 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20378337 20378337 PRJNA922890_P_NODE_79376_length_230_cov_0.894410_g78966_i0 PRJNA922890 79376 230 0.89441 2.057143 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 131 9.169999999999998e-37   NR KAF0735269.1 100861 g78966 i0 76.3 7.9304347826087 76 18 99.1 0 2 229 22 97 KAF0735269.1 hypothetical protein Ae201684_008184 [Aphanomyces euteiches] diamond 1824 131 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
31390887 31390887 PRJNA922890_P_NODE_76296_length_231_cov_2.833333_g75886_i0 PRJNA922890 76296 231 2.833333 6.54499923 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 83.2 7.04e-17   NR OQR81750.1 74557 g75886 i0 74.1 8.4025974025974 54 14 70.1 0 211 50 263 316 OQR81750.1 hypothetical protein THRCLA_11448, partial [Thraustotheca clavata] diamond 1941 83.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
31415121 31415121 PRJNA922890_P_NODE_65136_length_240_cov_1.695906_g64726_i0 PRJNA922890 65136 240 1.695906 4.0701744 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0337   NR XP_008619344.1 1156394 g64726 i0 50 0.475 38 19 47.5 0 236 123 271 308 XP_008619344.1 hypothetical protein SDRG_14960 [Saprolegnia diclina VS20] diamond 114 42.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
31857829 31857829 PRJNA922890_P_NODE_67537_length_236_cov_1.736527_g67127_i0 PRJNA922890 67537 236 1.736527 4.09820372 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 70.5 5.55e-12   NR XP_008610277.1 1156394 g67127 i0 46.2 1.98305084745763 78 42 99.2 0 1 234 162 239 XP_008610277.1 hypothetical protein SDRG_06284 [Saprolegnia diclina VS20] diamond 468 70.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;