RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA922890" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA922890 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14005949 14005949 PRJNA922890_P_NODE_48171_length_281_cov_1.311321_g47761_i0 PRJNA922890 48171 281 1.311321 3.68481201 Metazoa 33208 Nematoda Nematoda 72 2.13e-13   NR TMS33193.1 34508 g47761 i0 44.2 9.08540925266904 95 50 98.2 2 6 281 1 95 TMS33193.1 hypothetical protein L596_000960 [Steinernema carpocapsae] diamond 2553 72 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
29842379 29842379 PRJNA922890_P_NODE_66631_length_237_cov_1.303571_g66221_i0 PRJNA922890 66631 237 1.303571 3.08946327 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.4 1.75e-20   NR XP_024507394.1 34506 g66221 i0 56.4 3.82278481012658 78 33 98.7 1 236 3 3 79 XP_024507394.1 40S ribosomal protein S18 [Strongyloides ratti] diamond 906 89.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32561545 32561545 PRJNA922890_P_NODE_83239_length_228_cov_0.918239_g82829_i0 PRJNA922890 83239 228 0.918239 2.09358492 Bursaphelenchus 6324 Nematoda Nematoda 108 3.29e-26   NR CAD5208692.1 6326 g82829 i0 60.8 2.92105263157895 74 29 97.4 0 223 2 239 312 CAD5208692.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 666 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;