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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA922890" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA922890 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26620339 26620339 PRJNA922890_P_NODE_84981_length_193_cov_4.290323_g84571_i0 PRJNA922890 84981 193 4.290323 8.28032339 root 1 Root_unresolved Root_unresolved 130 1.6100000000000002e-33   NR XP_030109804.2 10090 g84571 i0 95.2 11.7512953367876 63 3 97.9 0 3 191 93 155 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 2268 130 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27126317 27126317 PRJNA922890_P_NODE_57622_length_257_cov_2.702128_g57212_i0 PRJNA922890 57622 257 2.702128 6.94446896 root 1 Root_unresolved Root_unresolved 177 1.25e-50   NR XP_030110853.2 10090 g57212 i0 100 15.875486381323 85 0 99.2 0 3 257 137 221 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 4080 177 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27695658 27695658 PRJNA922890_P_NODE_63024_length_245_cov_1.284091_g62614_i0 PRJNA922890 63024 245 1.284091 3.14602295 root 1 Root_unresolved Root_unresolved 41.6 0.0373   NR KAJ1194836.1 8319 g62614 i0 47.1 1.0530612244898 51 27 62.4 0 183 31 44 94 KAJ1194836.1 hypothetical protein NDU88_004121 [Pleurodeles waltl] diamond 258 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27845826 27845826 PRJNA922890_P_NODE_76904_length_231_cov_0.901235_g76494_i0 PRJNA922890 76904 231 0.901235 2.08185285 Cricetulus griseus 10029 Chordata Chordata 46.6 0.00135   NR ERE67235.1 10029 g76494 i0 41 0.792207792207792 61 30 77.9 2 50 229 190 245 ERE67235.1 MMP37-like protein [Cricetulus griseus] diamond 183 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
28098483 28098483 PRJNA922890_P_NODE_67265_length_237_cov_0.869048_g66855_i0 PRJNA922890 67265 237 0.869048 2.05964376 Apodemus speciosus 105296 Chordata Chordata 44.7 0.00715   NR GAB1297857.1 105296 g66855 i0 61.5 0.493670886075949 39 14 49.4 1 186 70 1 38 GAB1297857.1 Ig alpha chain C region [Apodemus speciosus] diamond 117 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
28509083 28509083 PRJNA922890_P_NODE_72867_length_233_cov_0.890244_g72457_i0 PRJNA922890 72867 233 0.890244 2.07426852 Stegostoma tigrinum 3053191 Chordata Chordata 60.5 1.85e-8   NR XP_048415584.1 3053191 g72457 i0 100 1.80257510729614 28 0 36.1 0 233 150 830 857 XP_048415584.1 elongation factor 2 [Stegostoma tigrinum] diamond 420 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Stegostomatidae Stegostoma Stegostoma tigrinum
29084752 29084752 PRJNA922890_P_NODE_81688_length_229_cov_0.900000_g81278_i0 PRJNA922890 81688 229 0.9 2.061 Mammalia 40674 Chordata Chordata 43.9 0.0125   NR XP_046289624.2 9995 g81278 i0 98.7 5.97379912663755 76 1 99.6 0 2 229 266 341 XP_046289624.2 DNA topoisomerase 1 [Marmota monax] diamond 1368 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
29109096 29109096 PRJNA922890_P_NODE_74808_length_232_cov_0.895706_g74398_i0 PRJNA922890 74808 232 0.895706 2.07803792 Gymnogyps californianus 33616 Chordata Chordata 58.5 1.32e-8   NR XP_050758470.1 33616 g74398 i0 89.7 1.875 29 3 37.5 0 232 146 113 141 XP_050758470.1 ras-related protein Rap-2b isoform X2 [Gymnogyps californianus] diamond 435 58.9 0.99320882852292 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Cathartidae Gymnogyps Gymnogyps californianus
29771810 29771810 PRJNA922890_P_NODE_61131_length_249_cov_1.622222_g60721_i0 PRJNA922890 61131 249 1.622222 4.03933278 Rattus norvegicus 10116 Chordata Chordata 107 5.33e-28   NR EDL89811.1 10116 g60721 i0 100 0.530120481927711 44 0 53 0 133 2 1 44 EDL89811.1 dehydrogenase/reductase (SDR family) X chromosome (predicted), isoform CRA_d [Rattus norvegicus] diamond 132 107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
30158088 30158088 PRJNA922890_P_NODE_25432_length_377_cov_2.350649_g25022_i0 PRJNA922890 25432 377 2.350649 8.86194673 Mammalia 40674 Chordata Chordata 251 2.87e-75   NR XP_038625183.1 9261 g25022 i0 98.4 69.6286472148541 125 2 99.5 0 377 3 196 320 XP_038625183.1 nuclear factor NF-kappa-B p105 subunit [Tachyglossus aculeatus] diamond 26250 252 0.996031746031746 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
30561532 30561532 PRJNA922890_P_NODE_81853_length_229_cov_0.900000_g81443_i0 PRJNA922890 81853 229 0.9 2.061 Cnephaeus nilssonii 3371016 Chordata Chordata 42.7 0.0319   NR KAK1343539.1 3371016 g81443 i0 38.5 0.851528384279476 65 35 78.6 1 204 25 597 661 KAK1343539.1 hypothetical protein QTO34_016319 [Cnephaeus nilssonii] diamond 195 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii
31098764 31098764 PRJNA922890_P_NODE_78075_length_231_cov_0.888889_g77665_i0 PRJNA922890 78075 231 0.888889 2.05333359 Eschrichtius robustus 9764 Chordata Chordata 44.3 0.00691   NR KAJ8795024.1 9764 g77665 i0 56.1 0.532467532467532 41 18 53.2 0 229 107 160 200 KAJ8795024.1 hypothetical protein J1605_018611 [Eschrichtius robustus] diamond 123 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
31130220 31130220 PRJNA922890_P_NODE_61655_length_248_cov_1.418994_g61245_i0 PRJNA922890 61655 248 1.418994 3.51910512 Eschrichtius robustus 9764 Chordata Chordata 43.1 0.0174   NR KAJ8792181.1 9764 g61245 i0 34.6 1.28225806451613 78 46 88.3 1 248 30 5 82 KAJ8792181.1 hypothetical protein J1605_020032 [Eschrichtius robustus] diamond 318 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
31643583 31643583 PRJNA922890_P_NODE_67916_length_236_cov_0.874251_g67506_i0 PRJNA922890 67916 236 0.874251 2.06323236 Mammalia 40674 Chordata Chordata 55.5 1.06e-6   NR XP_045155269.1 9371 g67506 i0 100 32.7966101694915 30 0 38.1 0 236 147 332 361 XP_045155269.1 26S proteasome non-ATPase regulatory subunit 3 [Echinops telfairi] diamond 7740 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;