RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA922890" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA922890 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10180536 10180536 PRJNA922890_P_NODE_29148_length_353_cov_1.285211_g28738_i0 PRJNA922890 29148 353 1.285211 4.53679483 Gonium pectorale 33097 Plants Plants 196 2.48e-61   NR KXZ46735.1 33097 g28738 i0 78.6 99.4334277620397 117 25 99.4 0 351 1 42 158 KXZ46735.1 hypothetical protein GPECTOR_41g700 [Gonium pectorale] diamond 35100 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
10180683 10180683 PRJNA922890_P_NODE_76228_length_232_cov_0.883436_g75818_i0 PRJNA922890 76228 232 0.883436 2.04957152 Chlamydomonas incerta 51695 Plants Plants 129 8.09e-33   NR KAG2431845.1 51695 g75818 i0 83.8 1.91379310344828 74 12 95.7 0 2 223 318 391 KAG2431845.1 hypothetical protein HXX76_009338 [Chlamydomonas incerta] diamond 444 129 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
27087987 27087987 PRJNA922890_P_NODE_76142_length_232_cov_0.883436_g75732_i0 PRJNA922890 76142 232 0.883436 2.04957152 Dunaliella salina 3046 Plants Plants 79.7 2.23e-15   NR KAF5833444.1 3046 g75732 i0 82.2 0.581896551724138 45 8 58.2 0 36 170 343 387 KAF5833444.1 ribosomal protein L3 component of cytosolic 80S ribosome and 60S large subunit [Dunaliella salina] diamond 135 79.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
27790215 27790215 PRJNA922890_P_NODE_57724_length_257_cov_1.553191_g57314_i0 PRJNA922890 57724 257 1.553191 3.99170087 Chlorophyta 3041 Plants Plants 111 2.61e-26   NR ABG36932.1 3055 g57314 i0 63.5 14.8832684824903 85 31 99.2 0 2 256 288 372 ABG36932.1 glycolate dehydrogenase [Chlamydomonas reinhardtii] diamond 3825 112 0.991071428571429 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
28540825 28540825 PRJNA922890_P_NODE_63787_length_243_cov_1.666667_g63377_i0 PRJNA922890 63787 243 1.666667 4.05000081 Volvox carteri f. nagariensis 3068 Plants Plants 46.6 0.00093000000000000005   NR XP_002946219.1 3068 g63377 i0 42.6 3.2716049382716 61 34 74.1 1 239 60 13 73 XP_002946219.1 ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] diamond 795 46.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
31478557 31478557 PRJNA922890_P_NODE_25756_length_375_cov_1.424837_g25346_i0 PRJNA922890 25756 375 1.424837 5.34313875 Volvox africanus 51714 Plants Plants 95.1 6.24e-20   NR GIL62665.1 51714 g25346 i0 40.4 10.016 109 65 87.2 0 24 350 338 446 GIL62665.1 hypothetical protein Vafri_16850 [Volvox africanus] diamond 3756 95.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
32142761 32142761 PRJNA922890_P_NODE_27218_length_365_cov_1.472973_g26808_i0 PRJNA922890 27218 365 1.472973 5.37635145 Trebouxia sp. C 2796353 Plants Plants 73.6 4.5e-14   NR KAL0042167.1 2905653 g26808 i0 55.7 1.61917808219178 61 26 49.3 1 321 142 5 65 KAL0042167.1 hypothetical protein WJX77_005300 [Trebouxia sp. C0004] diamond 591 73.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;