contig_metadata
6 rows where analysis = "diamond", bioproject = "PRJNA922890" and tax_clade = "FCB group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 898492 | 898492 | PRJNA922890_P_NODE_68641_length_235_cov_1.614458_g68231_i0 | PRJNA922890 | 68641 | 235 | 1.614458 | 3.7939763 | Elizabethkingia | 308865 | Bacteria | Bacteria | 155 | 9.16e-42 | NR | WP_059154363.1 | 172045 | g68231 | i0 | 100 | 1.99148936170213 | 78 | 0 | 99.6 | 0 | 1 | 234 | 632 | 709 | WP_059154363.1 hypothetical protein [Elizabethkingia miricola] | diamond | 468 | 155 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Elizabethkingia | Elizabethkingia miricola | |
| 27782989 | 27782989 | PRJNA922890_P_NODE_72764_length_233_cov_0.890244_g72354_i0 | PRJNA922890 | 72764 | 233 | 0.890244 | 2.07426852 | Flammeovirgaceae bacterium | 2026740 | Bacteria | Bacteria | 84 | 8.53e-17 | NR | MFM7854740.1 | 2026740 | g72354 | i0 | 51.5 | 0.875536480686695 | 68 | 33 | 87.6 | 0 | 27 | 230 | 130 | 197 | MFM7854740.1 carbonic anhydrase family protein [Flammeovirgaceae bacterium] | diamond | 204 | 84 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Flammeovirgaceae | Flammeovirgaceae bacterium | ||
| 29235312 | 29235312 | PRJNA922890_P_NODE_34729_length_326_cov_1.140078_g34319_i0 | PRJNA922890 | 34729 | 326 | 1.140078 | 3.71665428 | Spirosomataceae bacterium | 2902720 | Bacteria | Bacteria | 44.7 | 0.0168 | NR | MFN3782593.1 | 2902720 | g34319 | i0 | 47.9 | 0.441717791411043 | 48 | 21 | 41.4 | 2 | 59 | 193 | 57 | 103 | MFN3782593.1 class I SAM-dependent methyltransferase [Spirosomataceae bacterium] | diamond | 144 | 44.7 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Spirosomataceae | Spirosomataceae bacterium | ||
| 29361576 | 29361576 | PRJNA922890_P_NODE_51529_length_272_cov_1.172414_g51119_i0 | PRJNA922890 | 51529 | 272 | 1.172414 | 3.18896608 | Flavobacterium sp. | 239 | Bacteria | Bacteria | 162 | 6.86e-44 | NR | WP_291275852.1 | 239 | g51119 | i0 | 95.6 | 0.992647058823529 | 90 | 4 | 99.3 | 0 | 2 | 271 | 565 | 654 | WP_291275852.1 beta strand repeat-containing protein, partial [Flavobacterium sp.] | diamond | 270 | 162 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium sp. | |
| 29519365 | 29519365 | PRJNA922890_P_NODE_58190_length_256_cov_1.540107_g57780_i0 | PRJNA922890 | 58190 | 256 | 1.540107 | 3.94267392 | Chitinophagaceae bacterium | 1869212 | Bacteria | Bacteria | 70.1 | 1.05e-11 | NR | MCA6491979.1 | 1869212 | g57780 | i0 | 44.7 | 0.99609375 | 85 | 47 | 99.6 | 0 | 255 | 1 | 562 | 646 | MCA6491979.1 ABC transporter permease [Chitinophagaceae bacterium] | diamond | 255 | 70.1 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Chitinophagia | Chitinophagales | Chitinophagaceae | Chitinophagaceae bacterium | ||
| 32047833 | 32047833 | PRJNA922890_P_NODE_73378_length_233_cov_0.890244_g72968_i0 | PRJNA922890 | 73378 | 233 | 0.890244 | 2.07426852 | Niastella populi | 550983 | Bacteria | Bacteria | 107 | 5.5700000000000006e-27 | NR | WP_081164353.1 | 550983 | g72968 | i0 | 67.5 | 2.93562231759657 | 77 | 25 | 99.1 | 0 | 2 | 232 | 94 | 170 | WP_081164353.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase [Niastella populi] | diamond | 684 | 107 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Chitinophagia | Chitinophagales | Chitinophagaceae | Niastella | Niastella populi |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;