RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA922890" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA922890 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27853168 27853168 PRJNA922890_P_NODE_80384_length_229_cov_1.750000_g79974_i0 PRJNA922890 80384 229 1.75 4.0075 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 2.6999999999999997e-25   NR XP_013762089.1 461836 g79974 i0 64.5 8.24017467248908 76 22 93 1 224 12 52 127 XP_013762089.1 inositol-3-phosphate synthase [Thecamonas trahens ATCC 50062] diamond 1887 107 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29968746 29968746 PRJNA922890_P_NODE_75411_length_232_cov_0.883436_g75001_i0 PRJNA922890 75411 232 0.883436 2.04957152 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89 1.56e-18   NR XP_013758825.1 461836 g75001 i0 56 6.78879310344828 75 33 97 0 8 232 120 194 XP_013758825.1 serine palmitoyltransferase 2 [Thecamonas trahens ATCC 50062] diamond 1575 89.4 0.995525727069351 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;