RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA917598" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA917598 · 20 ✖

analysis 1

  • diamond · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26936895 26936895 PRJNA917598_P_NODE_49462_length_326_cov_1.217391_g48518_i0 PRJNA917598 49462 326 1.217391 3.96869466 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 160 6.079999999999999e-46   NR XP_021036129.1 10089 g48518 i0 79.4 661.960122699386 107 20 96.6 1 325 11 232 338 XP_021036129.1 uncharacterized protein LOC110308115 [Mus caroli] diamond 215799 161 0.993788819875776 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
27853157 27853157 PRJNA917598_P_NODE_72384_length_267_cov_1.319588_g71440_i0 PRJNA917598 72384 267 1.319588 3.52329996 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.8 1.85e-8   NR XDA78288.1 9940 g71440 i0 44.3 2.80898876404494 70 39 78.7 0 56 265 48 117 XDA78288.1 hypothetical protein R6Z07_008468 [Ovis aries] diamond 750 61.2 0.993464052287582 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
28042710 28042710 PRJNA917598_P_NODE_93985_length_242_cov_0.911243_g93041_i0 PRJNA917598 93985 242 0.911243 2.20520806 Chordata 7711 Chordata Chordata 49.7 1.28e-4   NR KAB0374057.1 9886 g93041 i0 57.5 4.95867768595041 40 17 49.6 0 39 158 408 447 KAB0374057.1 hypothetical protein FD755_014313 [Muntiacus reevesi] diamond 1200 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
28098478 28098478 PRJNA917598_P_NODE_94285_length_242_cov_0.911243_g93341_i0 PRJNA917598 94285 242 0.911243 2.20520806 Phallusia mammillata 59560 Chordata Chordata 63.5 1.72e-9   NR CAB3243811.1 59560 g93341 i0 44.4 4.06611570247934 72 26 73.1 3 200 24 348 418 CAB3243811.1 extended synaptotagmin-2 [Phallusia mammillata] diamond 984 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28484739 28484739 PRJNA917598_P_NODE_66846_length_278_cov_1.482927_g65902_i0 PRJNA917598 66846 278 1.482927 4.12253706 Anura 8342 Chordata Chordata 64.7 1.06e-9   NR CAH2306950.1 61616 g65902 i0 46.4 3.79856115107914 69 33 70.1 1 219 25 81 149 CAH2306950.1 poly(A)-specific ribonuclease PARN isoform X1 [Pelobates cultripes] diamond 1056 64.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
28824483 28824483 PRJNA917598_P_NODE_78688_length_252_cov_2.418994_g77744_i0 PRJNA917598 78688 252 2.418994 6.09586488 Erpetoichthys calabaricus 27687 Chordata Chordata 45.4 0.00465   NR XP_028676012.2 27687 g77744 i0 36.9 0.773809523809524 65 38 73.8 1 187 2 86 150 XP_028676012.2 toll-like receptor 5 isoform X2 [Erpetoichthys calabaricus] diamond 195 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
29235243 29235243 PRJNA917598_P_NODE_30889_length_414_cov_1.803519_g29945_i0 PRJNA917598 30889 414 1.803519 7.46656866 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0385   NR KAG2471189.1 55291 g29945 i0 57.1 0.253623188405797 35 15 25.4 0 222 326 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29235300 29235300 PRJNA917598_P_NODE_87909_length_246_cov_0.890173_g86965_i0 PRJNA917598 87909 246 0.890173 2.18982558 Dromiciops gliroides 33562 Chordata Chordata 68.6 2.63e-11   NR XP_043827924.1 33562 g86965 i0 51.5 0.804878048780488 66 32 80.5 0 28 225 41 106 XP_043827924.1 cathepsin W [Dromiciops gliroides] diamond 198 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
29266594 29266594 PRJNA917598_P_NODE_93529_length_242_cov_1.414201_g92585_i0 PRJNA917598 93529 242 1.414201 3.42236642 Ranitomeya imitator 111125 Chordata Chordata 82.4 3.33e-16   NR XP_069585547.1 111125 g92585 i0 48.6 5.3801652892562 72 37 89.3 0 224 9 113 184 XP_069585547.1 uncharacterized protein [Ranitomeya imitator] diamond 1302 82.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29361559 29361559 PRJNA917598_P_NODE_85549_length_247_cov_1.643678_g84605_i0 PRJNA917598 85549 247 1.643678 4.05988466 Cricetulus griseus 10029 Chordata Chordata 69.7 1.91e-13   NR ERE84900.1 10029 g84605 i0 57.6 0.801619433198381 66 27 80.2 1 245 48 18 82 ERE84900.1 hypothetical protein H671_2g5618 [Cricetulus griseus] diamond 198 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
29361573 29361573 PRJNA917598_P_NODE_95989_length_241_cov_0.916667_g95045_i0 PRJNA917598 95989 241 0.916667 2.20916747 Myxine glutinosa 7769 Chordata Chordata 43.5 0.0192   NR XP_067982332.1 7769 g95045 i0 46.5 1.58091286307054 43 23 53.5 0 219 91 95 137 XP_067982332.1 putative protein MSS51 homolog, mitochondrial [Myxine glutinosa] diamond 381 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
29968744 29968744 PRJNA917598_P_NODE_89311_length_245_cov_0.895349_g88367_i0 PRJNA917598 89311 245 0.895349 2.19360505 Opisthokonta 33154 Chordata Chordata 84.3 7.55e-17   NR XP_031754060.1 8364 g88367 i0 44.4 18.6244897959184 81 42 95.5 1 244 11 262 342 XP_031754060.1 protein kinase C delta type-like [Xenopus tropicalis] diamond 4563 84.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30814508 30814508 PRJNA917598_P_NODE_85914_length_247_cov_0.885057_g84970_i0 PRJNA917598 85914 247 0.885057 2.18609079 Petromyzon marinus 7757 Chordata Chordata 84 8.93e-17   NR XP_032818483.1 7757 g84970 i0 45.9 2.7085020242915 74 38 89.9 1 223 2 104 175 XP_032818483.1 phytanoyl-CoA dioxygenase, peroxisomal-like [Petromyzon marinus] diamond 669 84 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
31004144 31004144 PRJNA917598_P_NODE_26694_length_446_cov_4.691689_g25750_i0 PRJNA917598 26694 446 4.691689 20.92493294 Erpetoichthys calabaricus 27687 Chordata Chordata 134 6.889999999999998e-35   NR XP_051791274.1 27687 g25750 i0 77.8 5.50224215246637 90 19 59.9 1 405 139 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 134 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31390883 31390883 PRJNA917598_P_NODE_93996_length_242_cov_0.911243_g93052_i0 PRJNA917598 93996 242 0.911243 2.20520806 Chondrichthyes 7777 Chordata Chordata 56.6 4.77e-7   NR XP_043529898.1 36176 g93052 i0 48.1 8.05785123966942 81 37 96.7 3 242 9 176 254 XP_043529898.1 probable E3 ubiquitin-protein ligase HERC3 [Chiloscyllium plagiosum] diamond 1950 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
31770255 31770255 PRJNA917598_P_NODE_81517_length_250_cov_0.870056_g80573_i0 PRJNA917598 81517 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 48.9 2.75e-4   NR CAH1242630.1 7740 g80573 i0 37.5 4.476 72 43 85.2 2 227 15 2315 2385 CAH1242630.1 Hypp6913 [Branchiostoma lanceolatum] diamond 1119 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
31794373 31794373 PRJNA917598_P_NODE_23437_length_478_cov_5.748148_g22495_i0 PRJNA917598 23437 478 5.748148 27.47614744 Rattus norvegicus 10116 Chordata Chordata 50.1 0.00118   NR AAS66221.1 10116 g22495 i0 30.2 0.872384937238494 139 73 81 8 422 36 1070 1194 AAS66221.1 LRRG00130 [Rattus norvegicus] diamond 417 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
31864974 31864974 PRJNA917598_P_NODE_85317_length_248_cov_0.880000_g84373_i0 PRJNA917598 85317 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 72.8 1.06e-12   NR XP_041047780.1 13397 g84373 i0 43.9 2.96370967741935 82 43 99.2 2 3 248 1494 1572 XP_041047780.1 A disintegrin and metalloproteinase with thrombospondin motifs 9-like isoform X1 [Carcharodon carcharias] diamond 735 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
32047796 32047796 PRJNA917598_P_NODE_66878_length_278_cov_1.443902_g65934_i0 PRJNA917598 66878 278 1.443902 4.01404756 Engystomops pustulosus 76066 Chordata Chordata 44.7 0.00172   NR KAG8543241.1 76066 g65934 i0 53.3 1.40287769784173 45 17 44.2 1 242 120 28 72 KAG8543241.1 hypothetical protein GDO81_025125 [Engystomops pustulosus] diamond 390 45.1 0.991130820399113 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32498220 32498220 PRJNA917598_P_NODE_94739_length_242_cov_0.893491_g93795_i0 PRJNA917598 94739 242 0.893491 2.16224822 Metazoa 33208 Chordata Chordata 107 6.23e-25   NR DBA16989.1 30357 g93795 i0 61.3 9.91735537190083 80 23 99.2 1 1 240 174 245 DBA16989.1 TPA: hypothetical protein GDO54_002509 [Pyxicephalus adspersus] diamond 2400 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pyxicephalidae Pyxicephalus Pyxicephalus adspersus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;