RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA914897" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA914897 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28130111 28130111 PRJNA914897_P_NODE_1085_length_1624_cov_4.018698_g963_i0 PRJNA914897 1085 1624 4.018698 65.26365552 Vulcanisaeta sp. 2020871 Archaea Archaea 241 1.1999999999999998e-69   NR MFP3236626.1 2020871 g963 i0 34.4 0.777709359605911 421 265 77 7 278 1528 16 429 MFP3236626.1 aspartate aminotransferase family protein [Vulcanisaeta sp.] diamond 1263 241 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta sp.
28540707 28540707 PRJNA914897_P_NODE_3227_length_1101_cov_3.748054_g2967_i0 PRJNA914897 3227 1101 3.748054 41.26607454 Desulfurococcaceae archaeon 2184738 Archaea Archaea 188 8.78e-52   NR MEM1627864.1 2184738 g2967 i0 36.3 4.27792915531335 314 178 84.5 9 987 58 134 429 MEM1627864.1 translation elongation factor EF-1 subunit alpha [Desulfurococcaceae archaeon] diamond 4710 188 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae   Desulfurococcaceae archaeon
32585661 32585661 PRJNA914897_P_NODE_35799_length_255_cov_0.945055_g35375_i0 PRJNA914897 35799 255 0.945055 2.40989025 Ignisphaera sp. 2268142 Archaea Archaea 43.5 0.0224   NR MEM4010254.1 2268142 g35375 i0 37 0.858823529411765 73 40 80 2 250 47 284 355 MEM4010254.1 beta-galactosidase BgaS [Ignisphaera sp.] diamond 219 43.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;