RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA911178" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA911178 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29084703 29084703 PRJNA911178_P_NODE_283348_length_243_cov_0.905882_g280874_i0 PRJNA911178 283348 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 99 5.46e-22   NR WP_206602619.1 2094 g280874 i0 72.6 402.851851851852 73 20 90.1 0 232 14 336 408 WP_206602619.1 cbb3-type cytochrome c oxidase subunit I [Mycoplasmopsis arginini] diamond 97893 99.8 0.991983967935872 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
29266402 29266402 PRJNA911178_P_NODE_115709_length_340_cov_1.209738_g113237_i0 PRJNA911178 115709 340 1.209738 4.1131092 Malacoplasma muris 2119 Bacteria Bacteria 41.2 0.0474   NR WP_412031930.1 2119 g113237 i0 34.4 0.564705882352941 64 32 56.5 1 57 248 12 65 WP_412031930.1 TM2 domain-containing protein [Malacoplasma muris] diamond 192 41.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma muris
32900099 32900099 PRJNA911178_P_NODE_174140_length_286_cov_2.131455_g171667_i0 PRJNA911178 174140 286 2.131455 6.0959613 Candidatus Izimaplasma bacterium ZiA1 2024899 Bacteria Bacteria 113 2.98e-29   NR PAT00927.1 2024899 g171667 i0 59.3 0.954545454545455 91 36 95.5 1 285 13 87 176 PAT00927.1 hypothetical protein CI105_09315 [Candidatus Izimaplasma bacterium ZiA1] diamond 273 113 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. ZiA1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;