RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA911178" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA911178 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3802642 3802642 PRJNA911178_P_NODE_61783_length_445_cov_1.967742_g59332_i0 PRJNA911178 61783 445 1.967742 8.7564519 Cercozoa sp. DMV 1342330 SAR_Eukaryotes SAR_Eukaryotes 254 1.7400000000000002e-80   NR BAN37425.1 1342330 g59332 i0 80.8 0.984269662921348 146 28 98.4 0 438 1 266 411 BAN37425.1 elongation factor 1-alpha [Cercozoa sp. DMV] diamond 438 254 1 Eukaryota Sar   Cercozoa         Cercozoa sp. DMV
29235085 29235085 PRJNA911178_P_NODE_155569_length_300_cov_1.339207_g153096_i0 PRJNA911178 155569 300 1.339207 4.017621 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 160 2.88e-46   NR MES1911029.1 1215613 g153096 i0 75.8 0.99 99 24 99 0 4 300 14 112 MES1911029.1 hypothetical protein [Cercozoa sp. M6MM] diamond 297 160 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29992996 29992996 PRJNA911178_P_NODE_296071_length_239_cov_6.728916_g293597_i0 PRJNA911178 296071 239 6.728916 16.08210924 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 129 3.38e-37   NR YP_009118059.1 372086 g293597 i0 84.6 0.97907949790795 78 12 97.9 0 5 238 1 78 YP_009118059.1 ATP synthase F1 subunit alpha [Paracercomonas marina] diamond 234 129 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
30404082 30404082 PRJNA911178_P_NODE_213353_length_264_cov_2.219895_g210879_i0 PRJNA911178 213353 264 2.219895 5.8605228 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 112 1.89e-27   NR MES1908895.1 1215613 g210879 i0 61.6 1.96590909090909 86 32 97.7 1 259 2 147 231 MES1908895.1 hypothetical protein [Cercozoa sp. M6MM] diamond 519 112 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;