RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA911178" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA911178 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26644403 26644403 PRJNA911178_P_NODE_290261_length_241_cov_2.339286_g287787_i0 PRJNA911178 290261 241 2.339286 5.63767926 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 44.3 0.0109   NR MBI2423385.1 2030809 g287787 i0 37.1 0.771784232365145 62 39 77.2 0 211 26 1423 1484 MBI2423385.1 exo-alpha-sialidase [Candidatus Hydrogenedentota bacterium] diamond 186 44.3 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
27213942 27213942 PRJNA911178_P_NODE_303162_length_229_cov_4.378205_g300688_i0 PRJNA911178 303162 229 4.378205 10.02608945 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 84 9.61e-17   NR MCH7959314.1 2030809 g300688 i0 52.7 2.80349344978166 74 33 94.3 1 13 228 629 702 MCH7959314.1 SDR family NAD(P)-dependent oxidoreductase [Candidatus Hydrogenedentota bacterium] diamond 642 84 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31541551 31541551 PRJNA911178_P_NODE_202396_length_270_cov_2.131980_g199922_i0 PRJNA911178 202396 270 2.13198 5.756346 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 43.9 0.0204   NR MEW5692005.1 2030809 g199922 i0 44.9 0.544444444444444 49 24 54.4 1 154 8 682 727 MEW5692005.1 transcription-repair coupling factor [Candidatus Hydrogenedentota bacterium] diamond 147 43.9 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31952583 31952583 PRJNA911178_P_NODE_250637_length_249_cov_0.875000_g248163_i0 PRJNA911178 250637 249 0.875 2.17875 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 45.8 0.00348   NR HOC69996.1 2030809 g248163 i0 35.8 1.6144578313253 67 41 79.5 2 25 222 207 272 HOC69996.1 PKD domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 402 45.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;