RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA909412" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20375526 20375526 PRJNA909412_P_NODE_6776_length_202_cov_2.355828_g6635_i0 PRJNA909412 6776 202 2.355828 4.75877256 Bacteria 2 Bacteria Bacteria 122 2.75e-30   NR MBT8037638.1 2499141 g6635 i0 80.6 9.93564356435644 67 13 99.5 0 2 202 624 690 MBT8037638.1 aminomethyl-transferring glycine dehydrogenase [Verrucomicrobiia bacterium] diamond 2007 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28571882 28571882 PRJNA909412_P_NODE_16767_length_151_cov_2.482143_g16626_i0 PRJNA909412 16767 151 2.482143 3.74803593 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 67.8 1.12e-11   NR MEP6809396.1 2201154 g16626 i0 61.7 0.933774834437086 47 18 93.4 0 142 2 119 165 MEP6809396.1 arginine deiminase-related protein [Chthoniobacterales bacterium] diamond 141 67.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29298169 29298169 PRJNA909412_P_NODE_11949_length_165_cov_1.936508_g11808_i0 PRJNA909412 11949 165 1.936508 3.1952382 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 82.8 7.49e-17   NR MCB1120004.1 2499141 g11808 i0 82 2.72727272727273 50 9 90.9 0 3 152 125 174 MCB1120004.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase [Verrucomicrobiia bacterium] diamond 450 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;