RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA909412" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA909412 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441537 3441537 PRJNA909412_P_NODE_9523_length_174_cov_1.844444_g9382_i0 PRJNA909412 9523 174 1.844444 3.20933256 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 95.9 2.76e-21   NR XP_002777422.1 423536 g9382 i0 86.3 2.60344827586207 51 7 87.9 0 5 157 559 609 XP_002777422.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 453 95.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
13644345 13644345 PRJNA909412_P_NODE_5071_length_232_cov_1.720207_g4930_i0 PRJNA909412 5071 232 1.720207 3.99088024 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 139 4.91e-36   NR XP_002774046.1 423536 g4930 i0 81.8 3.95689655172414 77 14 99.6 0 2 232 3804 3880 XP_002774046.1 dynein-1-alpha heavy chain, flagellar inner arm I1 complex, putative [Perkinsus marinus ATCC 50983] diamond 918 139 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
26968503 26968503 PRJNA909412_P_NODE_5002_length_233_cov_2.211340_g4861_i0 PRJNA909412 5002 233 2.21134 5.1524222 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 64.3 8.91e-11   NR KAF4738147.1 32597 g4861 i0 50.6 7.27467811158798 77 36 96.6 2 228 4 73 149 KAF4738147.1 hypothetical protein FOZ62_010535, partial [Perkinsus olseni] diamond 1695 64.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29077273 29077273 PRJNA909412_P_NODE_12068_length_164_cov_1.640000_g11927_i0 PRJNA909412 12068 164 1.64 2.6896 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.36e-11   NR XP_002777422.1 423536 g11927 i0 53.7 0.98780487804878 54 25 98.8 0 163 2 188 241 XP_002777422.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 162 68.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;