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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA909412" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA909412 · 30 ✖

analysis 1

  • diamond · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4719215 4719215 PRJNA909412_P_NODE_2944_length_307_cov_2.171642_g2804_i0 PRJNA909412 2944 307 2.171642 6.66694094 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 5.989999999999999e-32   NR XP_069085104.1 8319 g2804 i0 62.7 21.6938110749186 102 35 96.7 1 305 9 344 445 XP_069085104.1 thioredoxin reductase 1, cytoplasmic [Pleurodeles waltl] diamond 6660 129 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
9818517 9818517 PRJNA909412_P_NODE_1328_length_482_cov_12.015801_g1189_i0 PRJNA909412 1328 482 12.015801 57.91616082 Ranitomeya imitator 111125 Chordata Chordata 133 2.05e-35   NR CAJ0946641.1 111125 g1189 i0 66.7 44.0539419087137 102 34 63.5 0 8 313 27 128 CAJ0946641.1 unnamed protein product [Ranitomeya imitator] diamond 21234 134 0.992537313432836 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
12369812 12369812 PRJNA909412_P_NODE_370_length_929_cov_29.374157_g303_i0 PRJNA909412 370 929 29.374157 272.88591853 Ovis aries 9940 Chordata Chordata 270 1.93e-85   NR XDA82938.1 9940 g303 i0 54.7 18.6652314316469 254 112 81.4 2 904 149 1 253 XDA82938.1 hypothetical protein R6Z07_013026 [Ovis aries] diamond 17340 270 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
12369813 12369813 PRJNA909412_P_NODE_3810_length_269_cov_1.873913_g3669_i0 PRJNA909412 3810 269 1.873913 5.04082597 Chordata 7711 Chordata Chordata 88.6 3.97e-18   NR XP_067914713.1 7792 g3669 i0 66.7 3.82527881040892 57 19 63.6 0 3 173 674 730 XP_067914713.1 ATP-binding cassette sub-family C member 3 isoform X1 [Heterodontus francisci] diamond 1029 89 0.995505617977528 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
17468963 17468963 PRJNA909412_P_NODE_1774_length_410_cov_17.932615_g1634_i0 PRJNA909412 1774 410 17.932615 73.5237215 Opisthokonta 33154 Chordata Chordata 123 2.04e-33   NR KAF7238603.1 61221 g1634 i0 68.6 10.390243902439 86 27 62.9 0 14 271 33 118 KAF7238603.1 40S ribosomal protein S27 [Varanus komodoensis] diamond 4260 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
24200769 24200769 PRJNA909412_P_NODE_4059_length_261_cov_2.441441_g3918_i0 PRJNA909412 4059 261 2.441441 6.37216101 Aves 8782 Chordata Chordata 72 2.33e-12   NR XP_050195919.1 478635 g3918 i0 44.4 6.94252873563218 72 40 82.8 0 254 39 512 583 XP_050195919.1 LOW QUALITY PROTEIN: protein RRP5 homolog [Myiozetetes cayanensis] diamond 1812 72 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Myiozetetes Myiozetetes cayanensis
27221263 27221263 PRJNA909412_P_NODE_4322_length_252_cov_2.089202_g4181_i0 PRJNA909412 4322 252 2.089202 5.26478904 Chordata 7711 Chordata Chordata 102 1.12e-24   NR KAJ1164804.1 8319 g4181 i0 64.6 30.2619047619048 82 29 97.6 0 5 250 119 200 KAJ1164804.1 hypothetical protein NDU88_005238 [Pleurodeles waltl] diamond 7626 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27340651 27340651 PRJNA909412_P_NODE_2463_length_339_cov_1.913333_g2323_i0 PRJNA909412 2463 339 1.913333 6.48619887 Branchiostoma floridae 7739 Chordata Chordata 98.2 7.059999999999999e-23   NR XP_035670544.1 7739 g2323 i0 53.1 0.867256637168142 98 43 84.1 2 53 337 2 99 XP_035670544.1 glutathione S-transferase 1-like [Branchiostoma floridae] diamond 294 98.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27443024 27443024 PRJNA909412_P_NODE_11023_length_172_cov_2.135338_g10882_i0 PRJNA909412 11023 172 2.135338 3.67278136 Metazoa 33208 Chordata Chordata 55.1 6.43e-7   NR XP_039262543.1 7725 g10882 i0 52.6 6.8546511627907 57 24 94.2 1 1 162 575 631 XP_039262543.1 dipeptidyl peptidase 3-like [Styela clava] diamond 1179 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27632239 27632239 PRJNA909412_P_NODE_7024_length_199_cov_1.912500_g6883_i0 PRJNA909412 7024 199 1.9125 3.805875 Chordata 7711 Chordata Chordata 49.3 1.02e-4   NR XP_067321617.1 38937 g6883 i0 39.7 10.1005025125628 73 33 95 3 189 1 27 98 XP_067321617.1 zinc finger protein RFP-like [Anolis sagrei] diamond 2010 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis sagrei
27940572 27940572 PRJNA909412_P_NODE_8905_length_179_cov_1.757143_g8764_i0 PRJNA909412 8905 179 1.757143 3.14528597 Mirounga leonina 9715 Chordata Chordata 65.1 2.02e-10   NR KAF3828249.1 9715 g8764 i0 51.7 9.95530726256983 60 28 98.9 1 179 3 216 275 KAF3828249.1 hypothetical protein GH733_004946 [Mirounga leonina] diamond 1782 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga leonina
28137523 28137523 PRJNA909412_P_NODE_7385_length_194_cov_2.896774_g7244_i0 PRJNA909412 7385 194 2.896774 5.61974156 Anura 8342 Chordata Chordata 79.7 1.67e-15   NR XP_040196038.1 8407 g7244 i0 62.7 3.66494845360825 59 22 91.2 0 179 3 222 280 XP_040196038.1 dipeptidyl peptidase 1 [Rana temporaria] diamond 711 80.1 0.995006242197254 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
28295152 28295152 PRJNA909412_P_NODE_13006_length_161_cov_1.672131_g12865_i0 PRJNA909412 13006 161 1.672131 2.69213091 Chordata 7711 Chordata Chordata 45.1 0.0017   NR XP_007906035.2 7868 g12865 i0 61.8 2.14285714285714 34 13 63.4 0 115 14 143 176 XP_007906035.2 glutathione S-transferase theta-1 [Callorhinchus milii] diamond 345 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
28445793 28445793 PRJNA909412_P_NODE_8786_length_180_cov_2.056738_g8645_i0 PRJNA909412 8786 180 2.056738 3.7021284 Erpetoichthys calabaricus 27687 Chordata Chordata 92.8 3.15e-20   NR XP_051788734.1 27687 g8645 i0 79.7 5.88333333333333 59 12 98.3 0 179 3 418 476 XP_051788734.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1059 93.2 0.995708154506438 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
28508845 28508845 PRJNA909412_P_NODE_16947_length_151_cov_1.973214_g16806_i0 PRJNA909412 16947 151 1.973214 2.97955314 Petromyzon marinus 7757 Chordata Chordata 56.2 1.85e-7   NR XP_032825787.1 7757 g16806 i0 42 4.96688741721854 50 29 99.3 0 2 151 428 477 XP_032825787.1 protein disulfide-isomerase-like [Petromyzon marinus] diamond 750 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
28516311 28516311 PRJNA909412_P_NODE_4727_length_240_cov_2.029851_g4586_i0 PRJNA909412 4727 240 2.029851 4.8716424 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 1.6000000000000002e-23   NR XP_019627646.1 7741 g4586 i0 60.3 43.4125 78 28 97.5 2 235 2 196 270 XP_019627646.1 PREDICTED: rab GDP dissociation inhibitor alpha-like isoform X2 [Branchiostoma belcheri] diamond 10419 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29305503 29305503 PRJNA909412_P_NODE_7729_length_190_cov_3.119205_g7588_i0 PRJNA909412 7729 190 3.119205 5.9264895 Chordata 7711 Chordata Chordata 43.1 0.0134   NR KAK9399564.1 8729 g7588 i0 38.3 11.3684210526316 60 37 94.7 0 6 185 224 283 KAK9399564.1 cystic fibrosis transmembrane conductance regulator [Crotalus adamanteus] diamond 2160 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
29400290 29400290 PRJNA909412_P_NODE_1809_length_405_cov_4.543716_g1669_i0 PRJNA909412 1809 405 4.543716 18.4020498 Metazoa 33208 Chordata Chordata 92.8 3.08e-20   NR XP_039268310.1 7725 g1669 i0 38.2 1.93333333333333 131 78 97 2 2 394 45 172 XP_039268310.1 glutathione S-transferase theta-1-like [Styela clava] diamond 783 92.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
29747326 29747326 PRJNA909412_P_NODE_17750_length_150_cov_2.045045_g17609_i0 PRJNA909412 17750 150 2.045045 3.0675675 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 61.6 2.22e-9   NR XP_002119502.1 7719 g17609 i0 61.2 3.82 49 19 98 0 148 2 37 85 XP_002119502.1 protein phosphatase 1G [Ciona intestinalis] diamond 573 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29779159 29779159 PRJNA909412_P_NODE_4151_length_258_cov_1.849315_g4010_i0 PRJNA909412 4151 258 1.849315 4.7712327 Chordata 7711 Chordata Chordata 101 1.21e-22   NR XP_056663830.1 13616 g4010 i0 56.5 12.8488372093023 85 37 98.8 0 258 4 151 235 XP_056663830.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 [Monodelphis domestica] diamond 3315 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Mammalia Didelphimorphia Didelphidae Monodelphis Monodelphis domestica
30253286 30253286 PRJNA909412_P_NODE_2332_length_349_cov_2.767742_g2192_i0 PRJNA909412 2332 349 2.767742 9.65941958 Mammalia 40674 Chordata Chordata 144 2.55e-38   NR XP_025046240.1 13735 g2192 i0 59.1 17.647564469914 115 43 98.9 1 3 347 294 404 XP_025046240.1 thioredoxin reductase 2, mitochondrial isoform X2 [Pelodiscus sinensis] diamond 6159 144 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
30561326 30561326 PRJNA909412_P_NODE_8873_length_179_cov_2.714286_g8732_i0 PRJNA909412 8873 179 2.714286 4.85857194 Rana temporaria 8407 Chordata Chordata 42 0.0304   NR XP_040209626.1 8407 g8732 i0 51.7 0.486033519553073 29 14 48.6 0 87 1 1398 1426 XP_040209626.1 uncharacterized protein LOC120940698 [Rana temporaria] diamond 87 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
30782721 30782721 PRJNA909412_P_NODE_9114_length_177_cov_2.630435_g8973_i0 PRJNA909412 9114 177 2.630435 4.65586995 Rattus norvegicus 10116 Chordata Chordata 43.1 0.00133   NR EDL95062.1 10116 g8973 i0 76 0.423728813559322 25 6 42.4 0 103 177 19 43 EDL95062.1 rCG27494 [Rattus norvegicus] diamond 75 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
31003991 31003991 PRJNA909412_P_NODE_13354_length_160_cov_3.181818_g13213_i0 PRJNA909412 13354 160 3.181818 5.0909088 Burhinus bistriatus 240201 Chordata Chordata 41.2 0.0393   NR NWQ92702.1 240201 g13213 i0 46.8 0.88125 47 19 76.9 1 13 135 124 170 NWQ92702.1 FNTB farnesyltransferase [Burhinus bistriatus] diamond 141 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Burhinidae Burhinus Burhinus bistriatus
31035820 31035820 PRJNA909412_P_NODE_9355_length_175_cov_2.330882_g9214_i0 PRJNA909412 9355 175 2.330882 4.0790435 Molossus molossus 27622 Chordata Chordata 41.6 0.0216   NR KAF6500903.1 27622 g9214 i0 36.8 0.977142857142857 57 34 94.3 1 8 172 85 141 KAF6500903.1 hypothetical protein HJG59_007930 [Molossus molossus] diamond 171 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
31928376 31928376 PRJNA909412_P_NODE_8077_length_187_cov_1.797297_g7936_i0 PRJNA909412 8077 187 1.797297 3.36094539 Ochotona 9977 Chordata Chordata 75.5 4.18e-14   NR XP_004581999.1 9978 g7936 i0 51.6 6.96256684491979 62 25 99.5 1 186 1 76 132 XP_004581999.1 chymosin-like [Ochotona princeps] diamond 1302 75.9 0.994729907773386 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
32561498 32561498 PRJNA909412_P_NODE_7059_length_198_cov_6.477987_g6918_i0 PRJNA909412 7059 198 6.477987 12.82641426 Chordata 7711 Chordata Chordata 80.1 1.26e-15   NR XP_020016276.1 51338 g6918 i0 62.9 6.77272727272727 62 23 93.9 0 189 4 321 382 XP_020016276.1 thioredoxin reductase 2, mitochondrial isoform X4 [Castor canadensis] diamond 1341 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Castoridae Castor Castor canadensis
32813095 32813095 PRJNA909412_P_NODE_12860_length_161_cov_2.950820_g12719_i0 PRJNA909412 12860 161 2.95082 4.7508202 Metazoa 33208 Chordata Chordata 49.3 5.98e-5   NR XP_069836109.1 150705 g12719 i0 80.8 2.98136645962733 26 5 48.4 0 81 158 718 743 XP_069836109.1 ATP-binding cassette sub-family C member 2 [Dendropsophus ebraccatus] diamond 480 49.7 0.991951710261569 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
32844607 32844607 PRJNA909412_P_NODE_2480_length_338_cov_2.197324_g2340_i0 PRJNA909412 2480 338 2.197324 7.42695512 Chordata 7711 Chordata Chordata 112 5.64e-26   NR XP_067870987.1 7792 g2340 i0 65.8 21.887573964497 79 27 70.1 0 2 238 888 966 XP_067870987.1 presequence protease, mitochondrial [Heterodontus francisci] diamond 7398 112 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
32868682 32868682 PRJNA909412_P_NODE_12700_length_161_cov_3.270492_g12559_i0 PRJNA909412 12700 161 3.270492 5.26549212 Styela clava 7725 Chordata Chordata 50.8 1.66e-5   NR XP_039270750.1 7725 g12559 i0 69 2.6832298136646 29 9 54 0 87 1 153 181 XP_039270750.1 branched-chain-amino-acid aminotransferase, cytosolic-like isoform X2 [Styela clava] diamond 432 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;