RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA909412" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA909412 · 30 ✖

analysis 1

  • diamond · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2165986 2165986 PRJNA909412_P_NODE_14142_length_158_cov_3.294118_g14001_i0 PRJNA909412 14142 158 3.294118 5.20470644 Microlunatus flavus 1036181 Bacteria Bacteria 106 2.2e-26   NR WP_091177874.1 1036181 g14001 i0 89.7 3.3037974683544298 58 0 98.7 1 156 1 86 143 WP_091177874.1 DNA/RNA non-specific endonuclease [Microlunatus flavus] diamond 522 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus flavus
8543589 8543589 PRJNA909412_P_NODE_16867_length_151_cov_2.160714_g16726_i0 PRJNA909412 16867 151 2.160714 3.26267814 Kytococcus sedentarius 1276 Bacteria Bacteria 69.7 3.27e-12   NR WP_204159138.1 1276 g16726 i0 50 1.62913907284768 82 8 97.4 1 5 151 438 519 WP_204159138.1 cytochrome b [Kytococcus sedentarius] diamond 246 69.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus sedentarius
18742160 18742160 PRJNA909412_P_NODE_13235_length_160_cov_3.388430_g13094_i0 PRJNA909412 13235 160 3.38843 5.421488 Leifsonia 110932 Bacteria Bacteria 84.3 2.25e-17   NR WP_179457413.1 582665 g13094 i0 72.7 4.95 66 5 99.4 1 1 159 271 336 WP_179457413.1 glutamate-1-semialdehyde 2,1-aminomutase [Leifsonia soli] diamond 792 84.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia soli
26842205 26842205 PRJNA909412_P_NODE_13021_length_161_cov_1.368852_g12880_i0 PRJNA909412 13021 161 1.368852 2.20385172 Brevibacterium 1696 Bacteria Bacteria 78.2 2.5e-15   NR WP_344308804.1 366888 g12880 i0 60.9 3.42857142857143 46 18 85.7 0 140 3 25 70 WP_344308804.1 NAD(P)-dependent alcohol dehydrogenase [Brevibacterium samyangense] diamond 552 78.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium samyangense
27087744 27087744 PRJNA909412_P_NODE_11022_length_172_cov_2.150376_g10881_i0 PRJNA909412 11022 172 2.150376 3.69864672 Micrococcus luteus 1270 Bacteria Bacteria 57.4 9.71e-8   NR WP_144825492.1 1270 g10881 i0 100 0.47093023255814 27 0 47.1 0 1 81 82 108 WP_144825492.1 tyrosine-type recombinase/integrase [Micrococcus luteus] diamond 81 57.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
27245650 27245650 PRJNA909412_P_NODE_14143_length_158_cov_3.294118_g14002_i0 PRJNA909412 14143 158 3.294118 5.20470644 Microbacterium sp. F2E 2895284 Bacteria Bacteria 55.1 4.93e-7   NR WP_229935355.1 2895284 g14002 i0 100 0.474683544303797 25 0 47.5 0 3 77 110 134 WP_229935355.1 2-phospho-L-lactate transferase [Microbacterium sp. F2E] diamond 75 55.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. F2E
27529978 27529978 PRJNA909412_P_NODE_9783_length_172_cov_4.218045_g9642_i0 PRJNA909412 9783 172 4.218045 7.2550374 Dietzia sp. 1871616 Bacteria Bacteria 57.8 5.32e-8   NR MDZ4233400.1 1871616 g9642 i0 100 0.453488372093023 26 0 45.3 0 171 94 151 176 MDZ4233400.1 PAC2 family protein [Dietzia sp.] diamond 78 57.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia sp.
27940566 27940566 PRJNA909412_P_NODE_15965_length_152_cov_5.238938_g15824_i0 PRJNA909412 15965 152 5.238938 7.96318576 Jatrophihabitantaceae bacterium 2811413 Bacteria Bacteria 59.7 1.11e-8   NR HLY34356.1 2811413 g15824 i0 53.3 0.888157894736842 45 21 88.8 0 135 1 214 258 HLY34356.1 aminopeptidase N [Jatrophihabitantaceae bacterium] diamond 135 59.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae   Jatrophihabitantaceae bacterium
28571884 28571884 PRJNA909412_P_NODE_9127_length_177_cov_2.384058_g8986_i0 PRJNA909412 9127 177 2.384058 4.21978266 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 60.5 8.18e-9   NR HXY91188.1 2080302 g8986 i0 65.9 3.98305084745763 41 13 69.5 1 174 52 305 344 HXY91188.1 NlpC/P60 family protein [Acidimicrobiia bacterium] diamond 705 60.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
28666789 28666789 PRJNA909412_P_NODE_10687_length_172_cov_2.751880_g10546_i0 PRJNA909412 10687 172 2.75188 4.7332336 Microbacterium sp. 51671 Bacteria Bacteria 47.8 4.16e-5   NR WP_292829420.1 51671 g10546 i0 87 0.401162790697674 23 3 40.1 0 100 168 23 45 WP_292829420.1 hypothetical protein [Microbacterium sp.] diamond 69 47.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp.
28698439 28698439 PRJNA909412_P_NODE_2987_length_305_cov_2.187970_g2847_i0 PRJNA909412 2987 305 2.18797 6.6733085 Actinomycetota bacterium 2900548 Bacteria Bacteria 117 1.83e-28   NR MBS1889662.1 2900548 g2847 i0 54.5 0.99344262295082 101 44 97.4 1 2 298 117 217 MBS1889662.1 ubiquitin-conjugating enzyme E2 [Actinomycetota bacterium] diamond 303 117 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28729870 28729870 PRJNA909412_P_NODE_17587_length_150_cov_2.567568_g17446_i0 PRJNA909412 17587 150 2.567568 3.851352 Microbacteriaceae bacterium 1873462 Bacteria Bacteria 45.4 0.00107   NR MCU1585733.1 1873462 g17446 i0 47.9 0.96 48 21 96 1 146 3 58 101 MCU1585733.1 aquaporin family protein [Microbacteriaceae bacterium] diamond 144 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae   Microbacteriaceae bacterium
28824265 28824265 PRJNA909412_P_NODE_1828_length_402_cov_4.173554_g1688_i0 PRJNA909412 1828 402 4.173554 16.77768708 Rothia sp. HMSC 1739260 Bacteria Bacteria 159 2.7499999999999996e-48   NR OFR99247.1 1739260 g1688 i0 98.7 0.58955223880597 79 1 59 0 369 133 1 79 OFR99247.1 hypothetical protein HMPREF2756_04590 [Rothia sp. HMSC067H10] diamond 237 159 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC067H10
29519130 29519130 PRJNA909412_P_NODE_13450_length_160_cov_2.950413_g13309_i0 PRJNA909412 13450 160 2.950413 4.7206608 Leifsonia sp. TF 1870902 Bacteria Bacteria 58.9 2.16e-8   NR WP_208039754.1 2815212 g13309 i0 100 0.4875 26 0 48.8 0 80 3 258 283 WP_208039754.1 hypothetical protein [Leifsonia sp. TF02-11] diamond 78 58.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. TF02-11
29519133 29519133 PRJNA909412_P_NODE_17830_length_150_cov_1.765766_g17689_i0 PRJNA909412 17830 150 1.765766 2.648649 Patulibacter sp. SYSU D 1912859 Bacteria Bacteria 79.3 1.34e-15   NR WP_210491883.1 2817381 g17689 i0 80 1 50 10 100 0 150 1 571 620 WP_210491883.1 hypothetical protein [Patulibacter sp. SYSU D01012] diamond 150 79.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Patulibacteraceae Patulibacter Patulibacter sp. SYSU D01012
30158025 30158025 PRJNA909412_P_NODE_9872_length_172_cov_3.691729_g9731_i0 PRJNA909412 9872 172 3.691729 6.34977388 Micrococcales 85006 Bacteria Bacteria 57.8 6.92e-8   NR WP_135029255.1 384602 g9731 i0 96.2 1.84883720930233 26 1 45.3 0 170 93 925 950 WP_135029255.1 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase [Micrococcus flavus] diamond 318 57.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus flavus
30340924 30340924 PRJNA909412_P_NODE_11312_length_170_cov_2.290076_g11171_i0 PRJNA909412 11312 170 2.290076 3.8931292 Arthrobacter sp. FW3 1667 Bacteria Bacteria 40 0.0191   NR WP_237429454.1 2879621 g11171 i0 45.5 0.776470588235294 44 22 77.6 1 167 36 16 57 WP_237429454.1 hypothetical protein [Arthrobacter sp. FW306-06-A] diamond 132 40 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. FW306-06-A
30435455 30435455 PRJNA909412_P_NODE_11533_length_168_cov_2.542636_g11392_i0 PRJNA909412 11533 168 2.542636 4.27162848 Rothia sp. (in: high G+C Gram-positive bacteria) 1885016 Bacteria Bacteria 45.4 0.0015   NR MDO4917622.1 1885016 g11392 i0 47.2 0.946428571428571 53 15 94.6 1 161 3 159 198 MDO4917622.1 aminopeptidase N [Rothia sp. (in: high G+C Gram-positive bacteria)] diamond 159 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. (in: high G+C Gram-positive bacteria)
30467112 30467112 PRJNA909412_P_NODE_9713_length_172_cov_6.233083_g9572_i0 PRJNA909412 9713 172 6.233083 10.72090276 Corynebacterium otitidis 29321 Bacteria Bacteria 58.5 3.83e-8   NR WP_241767390.1 29321 g9572 i0 77.3 0.767441860465116 44 8 75 2 171 43 456 498 WP_241767390.1 long-chain-fatty-acid--CoA ligase [Corynebacterium otitidis] diamond 132 58.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium otitidis
30624624 30624624 PRJNA909412_P_NODE_10073_length_172_cov_3.300752_g9932_i0 PRJNA909412 10073 172 3.300752 5.67729344 Georgenia sp. SUBG003 1497974 Bacteria Bacteria 51.2 1.5e-6   NR KEO71995.1 1497974 g9932 i0 47.1 6.66279069767442 68 22 94.2 2 10 171 13 80 KEO71995.1 glyoxalase, partial [Georgenia sp. SUBG003] diamond 1146 51.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Bogoriellaceae Georgenia Georgenia sp. SUBG003
30719498 30719498 PRJNA909412_P_NODE_5014_length_233_cov_1.850515_g4873_i0 PRJNA909412 5014 233 1.850515 4.31169995 Kitasatospora sp. MAA4 3035093 Bacteria Bacteria 44.3 0.00917   NR WP_280721939.1 3035093 g4873 i0 31.9 0.888412017167382 69 45 86.3 1 33 233 24 92 WP_280721939.1 alpha/beta hydrolase [Kitasatospora sp. MAA4] diamond 207 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. MAA4
30758630 30758630 PRJNA909412_P_NODE_13894_length_159_cov_2.783333_g13753_i0 PRJNA909412 13894 159 2.783333 4.42549947 Mycobacteriales 85007 Bacteria Bacteria 52.4 5.11e-7   NR MBB0997114.1 37915 g13753 i0 96.3 7.62264150943396 27 1 50.9 0 159 79 69 95 MBB0997114.1 iron chelate uptake ABC transporter family permease subunit [Dietzia maris] diamond 1212 52.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia maris
30758631 30758631 PRJNA909412_P_NODE_14434_length_157_cov_3.296610_g14293_i0 PRJNA909412 14434 157 3.29661 5.1756777 Williamsia 85043 Bacteria Bacteria 53.1 1.62e-6   NR WP_253646352.1 321325 g14293 i0 79.3 1.98726114649682 29 6 55.4 0 4 90 182 210 WP_253646352.1 NADPH-dependent F420 reductase [Williamsia deligens] diamond 312 53.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia deligens
31295765 31295765 PRJNA909412_P_NODE_3695_length_273_cov_3.153846_g3554_i0 PRJNA909412 3695 273 3.153846 8.60999958 Pseudonocardia 1847 Bacteria Bacteria 52.8 1.34e-5   NR WP_300013293.1 60912 g3554 i0 62.5 5.7032967032967 40 15 44 0 3 122 211 250 WP_300013293.1 S49 family peptidase [Pseudonocardia sp.] diamond 1557 53.1 0.994350282485876 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp.
31794196 31794196 PRJNA909412_P_NODE_12797_length_161_cov_3.114754_g12656_i0 PRJNA909412 12797 161 3.114754 5.01475394 Saccharopolyspora taberi 60895 Bacteria Bacteria 41.6 0.031   NR WP_344679271.1 60895 g12656 i0 63 0.503105590062112 27 9 48.4 1 86 9 261 287 WP_344679271.1 serine protease [Saccharopolyspora taberi] diamond 81 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora taberi
31889245 31889245 PRJNA909412_P_NODE_7797_length_190_cov_1.509934_g7656_i0 PRJNA909412 7797 190 1.509934 2.8688746 Frigoribacterium sp. Leaf186 1736293 Bacteria Bacteria 40.8 0.045   NR WP_157490241.1 1736293 g7656 i0 38.2 0.868421052631579 55 33 85.3 1 22 183 35 89 WP_157490241.1 hypothetical protein [Frigoribacterium sp. Leaf186] diamond 165 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. Leaf186
32174325 32174325 PRJNA909412_P_NODE_11598_length_168_cov_1.302326_g11457_i0 PRJNA909412 11598 168 1.302326 2.18790768 Kitasatospora sp. NBC_ 1871188 Bacteria Bacteria 53.9 1.51e-6   NR WP_331731077.1 2975962 g11457 i0 51.1 0.839285714285714 47 23 83.9 0 20 160 473 519 WP_331731077.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Kitasatospora sp. NBC_00070] diamond 141 53.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NBC_00070
32332640 32332640 PRJNA909412_P_NODE_16859_length_151_cov_2.169643_g16718_i0 PRJNA909412 16859 151 2.169643 3.27616093 Leifsonia sp. TF 1870902 Bacteria Bacteria 96.3 7.500000000000001e-22   NR WP_208040144.1 2815212 g16718 i0 96 0.993377483443709 50 2 99.3 0 1 150 203 252 WP_208040144.1 MFS transporter [Leifsonia sp. TF02-11] diamond 150 96.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. TF02-11
32458981 32458981 PRJNA909412_P_NODE_15059_length_155_cov_1.534483_g14918_i0 PRJNA909412 15059 155 1.534483 2.37844865 Actinomycetota bacterium 2900548 Bacteria Bacteria 54.3 1.96e-7   NR MBS1890137.1 2900548 g14918 i0 39.2 1.91612903225806 51 31 98.7 0 3 155 48 98 MBS1890137.1 hypothetical protein [Actinomycetota bacterium] diamond 297 54.3 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32585553 32585553 PRJNA909412_P_NODE_9439_length_174_cov_3.651852_g9298_i0 PRJNA909412 9439 174 3.651852 6.35422248 Nocardioides sp. 35761 Bacteria Bacteria 57 1.3e-7   NR MBS42771.1 35761 g9298 i0 68.3 0.706896551724138 41 13 70.7 0 50 172 166 206 MBS42771.1 NADH-quinone oxidoreductase subunit H [Nocardioides sp.] diamond 123 57 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;