RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA906294" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA906294 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26897874 26897874 PRJNA906294_P_NODE_218901_length_245_cov_0.883721_g214785_i0 PRJNA906294 218901 245 0.883721 2.16511645 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 70.1 8.62e-12   NR ETO05512.1 46433 g214785 i0 50 0.783673469387755 64 31 77.1 1 191 3 237 300 ETO05512.1 hypothetical protein RFI_31884, partial [Reticulomyxa filosa] diamond 192 70.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27537471 27537471 PRJNA906294_P_NODE_184263_length_271_cov_1.333333_g180147_i0 PRJNA906294 184263 271 1.333333 3.61333243 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 73.6 7.21e-13   NR ETO11489.1 46433 g180147 i0 43.4 1.54981549815498 76 43 84.1 0 42 269 404 479 ETO11489.1 hypothetical protein RFI_25888 [Reticulomyxa filosa] diamond 420 73.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;