contig_metadata
8 rows where analysis = "diamond", bioproject = "PRJNA904835" and tax_superkingdom = "Viruses"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3434337 | 3434337 | PRJNA904835_P_NODE_55943_length_245_cov_0.895349_g55687_i0 | PRJNA904835 | 55943 | 245 | 0.895349 | 2.19360505 | Begomovirus | 10814 | Viruses | Viruses | 79 | 4.46e-15 | NR | AGZ91416.1 | 10832 | g55687 | i0 | 66 | 7.62857142857143 | 53 | 18 | 64.9 | 0 | 243 | 85 | 299 | 351 | AGZ91416.1 replication associated protein [Tomato yellow leaf curl virus] | diamond | 1869 | 79.3 | 0.996216897856242 | Viruses | Shotokuvirae | Cressdnaviricota | Repensiviricetes | Geplafuvirales | Geminiviridae | Begomovirus | Begomovirus coheni | ||
| 16185237 | 16185237 | PRJNA904835_P_NODE_14913_length_538_cov_1.006452_g14661_i0 | PRJNA904835 | 14913 | 538 | 1.006452 | 5.41471176 | Yellow silver pine badnavirus 5 | 3068784 | Viruses | Viruses | 82 | 1.85e-14 | NR | WPR16502.1 | 3068784 | g14661 | i0 | 73.9 | 1.02602230483271 | 46 | 12 | 25.7 | 0 | 217 | 354 | 1054 | 1099 | WPR16502.1 MAG: polyprotein [Yellow silver pine badnavirus 5] | diamond | 552 | 82 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Caulimoviridae | Badnavirus | Yellow silver pine badnavirus 5 | ||
| 20009927 | 20009927 | PRJNA904835_P_NODE_42876_length_286_cov_1.079812_g42620_i0 | PRJNA904835 | 42876 | 286 | 1.079812 | 3.08826232 | Begomovirus | 10814 | Viruses | Viruses | 149 | 1.75e-41 | NR | QIJ32567.1 | 10832 | g42620 | i0 | 74 | 11.0769230769231 | 96 | 19 | 94.4 | 1 | 16 | 285 | 31 | 126 | QIJ32567.1 replication protein [Tomato yellow leaf curl virus] | diamond | 3168 | 149 | 1 | Viruses | Shotokuvirae | Cressdnaviricota | Repensiviricetes | Geplafuvirales | Geminiviridae | Begomovirus | Begomovirus coheni | ||
| 25474180 | 25474180 | PRJNA904835_P_NODE_6760_length_835_cov_1.274278_g6553_i0 | PRJNA904835 | 6760 | 835 | 1.274278 | 10.6402213 | Moloney murine leukemia virus | 11801 | Viruses | Viruses | 516 | 1.73e-167 | NR | NP_057933.2 | 11801 | g6553 | i0 | 97.6 | 7.26826347305389 | 253 | 6 | 90.9 | 0 | 76 | 834 | 658 | 910 | NP_057933.2 Pr180 [Moloney murine leukemia virus] | diamond | 6069 | 516 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 27727250 | 27727250 | PRJNA904835_P_NODE_45384_length_274_cov_1.532338_g45128_i0 | PRJNA904835 | 45384 | 274 | 1.532338 | 4.19860612 | Gammaretrovirus | 153135 | Viruses | Viruses | 170 | 1.0099999999999999e-46 | NR | NP_057933.2 | 11801 | g45128 | i0 | 95.6 | 13.7627737226277 | 90 | 4 | 98.5 | 0 | 3 | 272 | 1165 | 1254 | NP_057933.2 Pr180 [Moloney murine leukemia virus] | diamond | 3771 | 170 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Gammaretrovirus | Gammaretrovirus murleu | ||
| 29171833 | 29171833 | PRJNA904835_P_NODE_58449_length_242_cov_0.911243_g58193_i0 | PRJNA904835 | 58449 | 242 | 0.911243 | 2.20520806 | Blackberry virus F | 2560349 | Viruses | Viruses | 109 | 1.01e-25 | NR | XHV14367.1 | 2560349 | g58193 | i0 | 66.3 | 5.9504132231405 | 80 | 27 | 99.2 | 0 | 1 | 240 | 1489 | 1568 | XHV14367.1 MAG: polyprotein [Blackberry virus F] | diamond | 1440 | 109 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Caulimoviridae | Badnavirus | Badnavirus phirubi | ||
| 29803093 | 29803093 | PRJNA904835_P_NODE_39611_length_301_cov_2.026316_g39355_i0 | PRJNA904835 | 39611 | 301 | 2.026316 | 6.09921116 | Peanut chlorotic streak virus | 35593 | Viruses | Viruses | 85.1 | 8.46e-17 | NR | NP_042512.1 | 35593 | g39355 | i0 | 53.9 | 0.887043189368771 | 89 | 25 | 72.8 | 2 | 223 | 5 | 190 | 278 | NP_042512.1 hypothetical protein [Peanut chlorotic streak virus] | diamond | 267 | 85.1 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Caulimoviridae | Soymovirus | Soymovirus virgarachidis | ||
| 32458844 | 32458844 | PRJNA904835_P_NODE_44079_length_280_cov_1.487923_g43823_i0 | PRJNA904835 | 44079 | 280 | 1.487923 | 4.1661844 | Blackberry virus F | 2560349 | Viruses | Viruses | 128 | 4.219999999999999e-32 | NR | XHV14355.1 | 2560349 | g43823 | i0 | 65.6 | 5.97857142857143 | 93 | 32 | 99.6 | 0 | 1 | 279 | 1497 | 1589 | XHV14355.1 MAG: polyprotein [Blackberry virus F] | diamond | 1674 | 128 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Caulimoviridae | Badnavirus | Badnavirus phirubi |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;