contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA904835" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27308943 | 27308943 | PRJNA904835_P_NODE_38923_length_305_cov_1.327586_g38667_i0 | PRJNA904835 | 38923 | 305 | 1.327586 | 4.0491373 | Succiniclasticum ruminis | 40841 | Bacteria | Bacteria | 55.8 | 1.46e-6 | NR | WP_177206028.1 | 40841 | g38667 | i0 | 54.3 | 1.76065573770492 | 46 | 21 | 45.2 | 0 | 6 | 143 | 203 | 248 | WP_177206028.1 tetratricopeptide repeat protein [Succiniclasticum ruminis] | diamond | 537 | 55.8 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Acidaminococcales | Acidaminococcaceae | Succiniclasticum | Succiniclasticum ruminis | ||
| 27751083 | 27751083 | PRJNA904835_P_NODE_20684_length_443_cov_1.245946_g20429_i0 | PRJNA904835 | 20684 | 443 | 1.245946 | 5.51954078 | Lachnospiraceae bacterium | 1898203 | Bacteria | Bacteria | 46.6 | 0.00892 | NR | MCR5294432.1 | 1898203 | g20429 | i0 | 28.4 | 0.738148984198646 | 109 | 76 | 73.1 | 2 | 72 | 395 | 79 | 186 | MCR5294432.1 2'-5' RNA ligase family protein [Lachnospiraceae bacterium] | diamond | 327 | 46.6 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnospiraceae bacterium | |||
| 28161502 | 28161502 | PRJNA904835_P_NODE_21245_length_436_cov_1.236915_g20990_i0 | PRJNA904835 | 21245 | 436 | 1.236915 | 5.3929494 | [Clostridium] ultunense Esp | 1288971 | Bacteria | Bacteria | 45.8 | 0.0223 | NR | CCQ96739.1 | 1288971 | g20990 | i0 | 26.8 | 0.846330275229358 | 123 | 67 | 72.9 | 3 | 330 | 13 | 349 | 465 | CCQ96739.1 FAD dependent oxidoreductase [[Clostridium] ultunense Esp] | diamond | 369 | 45.8 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Tepidimicrobiaceae | Schnuerera | Schnuerera ultunensis | ||
| 29234902 | 29234902 | PRJNA904835_P_NODE_51849_length_250_cov_0.870056_g51593_i0 | PRJNA904835 | 51849 | 250 | 0.870056 | 2.17514 | Clostridia bacterium | 2044939 | Bacteria | Bacteria | 42.4 | 0.0473 | NR | MBQ5579994.1 | 2044939 | g51593 | i0 | 32 | 0.6 | 50 | 34 | 60 | 0 | 171 | 22 | 46 | 95 | MBQ5579994.1 lysoplasmalogenase [Clostridia bacterium] | diamond | 150 | 42.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Clostridia bacterium | |||||
| 30940736 | 30940736 | PRJNA904835_P_NODE_49754_length_254_cov_1.276243_g49498_i0 | PRJNA904835 | 49754 | 254 | 1.276243 | 3.24165722 | Paenibacillus apiarius | 46240 | Bacteria | Bacteria | 43.5 | 0.0217 | NR | WP_240463803.1 | 46240 | g49498 | i0 | 37.5 | 0.566929133858268 | 48 | 29 | 55.5 | 1 | 1 | 141 | 154 | 201 | WP_240463803.1 sulfate ABC transporter substrate-binding protein [Paenibacillus apiarius] | diamond | 144 | 43.5 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus apiarius | ||
| 31319760 | 31319760 | PRJNA904835_P_NODE_42515_length_287_cov_1.439252_g42259_i0 | PRJNA904835 | 42515 | 287 | 1.439252 | 4.13065324 | Bacilli bacterium | 1903720 | Bacteria | Bacteria | 53.5 | 9.55e-6 | NR | MBQ2408562.1 | 1903720 | g42259 | i0 | 28.4 | 0.993031358885017 | 95 | 67 | 98.3 | 1 | 284 | 3 | 191 | 285 | MBQ2408562.1 DUF4116 domain-containing protein [Bacilli bacterium] | diamond | 285 | 53.5 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacilli bacterium | |||||
| 31636056 | 31636056 | PRJNA904835_P_NODE_23836_length_409_cov_1.375000_g23581_i0 | PRJNA904835 | 23836 | 409 | 1.375 | 5.62375 | Lachnospiraceae bacterium | 1898203 | Bacteria | Bacteria | 47.4 | 0.0044 | NR | MCL2254903.1 | 1898203 | g23581 | i0 | 34 | 0.689486552567237 | 94 | 53 | 62.3 | 2 | 364 | 110 | 23 | 116 | MCL2254903.1 site-specific tyrosine recombinase XerD [Lachnospiraceae bacterium] | diamond | 282 | 47.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnospiraceae bacterium | |||
| 32300851 | 32300851 | PRJNA904835_P_NODE_14479_length_547_cov_1.559072_g14227_i0 | PRJNA904835 | 14479 | 547 | 1.559072 | 8.52812384 | Oscillospiraceae bacterium | 2485925 | Bacteria | Bacteria | 139 | 9.36e-38 | NR | MDK2802725.1 | 2485925 | g14227 | i0 | 52.5 | 1.3382084095064 | 122 | 57 | 66.9 | 1 | 5 | 370 | 3 | 123 | MDK2802725.1 N-acetyltransferase [Oscillospiraceae bacterium] | diamond | 732 | 139 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Oscillospiraceae bacterium | |||
| 32805532 | 32805532 | PRJNA904835_P_NODE_56360_length_244_cov_0.900585_g56104_i0 | PRJNA904835 | 56360 | 244 | 0.900585 | 2.1974274 | Clostridia bacterium | 2044939 | Bacteria | Bacteria | 41.2 | 0.0448 | NR | MBQ8893392.1 | 2044939 | g56104 | i0 | 40.3 | 0.762295081967213 | 62 | 31 | 68.9 | 2 | 58 | 225 | 39 | 100 | MBQ8893392.1 DUF1064 domain-containing protein [Clostridia bacterium] | diamond | 186 | 41.2 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Clostridia bacterium | |||||
| 32836986 | 32836986 | PRJNA904835_P_NODE_23320_length_414_cov_1.351906_g23065_i0 | PRJNA904835 | 23320 | 414 | 1.351906 | 5.59689084 | Alkalihalobacillus deserti | 2879466 | Bacteria | Bacteria | 50.4 | 3.06e-4 | NR | WP_227937726.1 | 2879466 | g23065 | i0 | 27.5 | 1.86231884057971 | 142 | 68 | 85.5 | 5 | 373 | 20 | 68 | 198 | WP_227937726.1 lipase family protein [Alkalihalobacillus deserti] | diamond | 771 | 50.4 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Alkalihalobacillus | Alkalihalobacillus deserti |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;