RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA904835" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJNA904835 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16185237 16185237 PRJNA904835_P_NODE_14913_length_538_cov_1.006452_g14661_i0 PRJNA904835 14913 538 1.006452 5.41471176 Yellow silver pine badnavirus 5 3068784 Viruses Viruses 82 1.85e-14   NR WPR16502.1 3068784 g14661 i0 73.9 1.02602230483271 46 12 25.7 0 217 354 1054 1099 WPR16502.1 MAG: polyprotein [Yellow silver pine badnavirus 5] diamond 552 82 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Yellow silver pine badnavirus 5
25474180 25474180 PRJNA904835_P_NODE_6760_length_835_cov_1.274278_g6553_i0 PRJNA904835 6760 835 1.274278 10.6402213 Moloney murine leukemia virus 11801 Viruses Viruses 516 1.73e-167   NR NP_057933.2 11801 g6553 i0 97.6 7.26826347305389 253 6 90.9 0 76 834 658 910 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 6069 516 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27727250 27727250 PRJNA904835_P_NODE_45384_length_274_cov_1.532338_g45128_i0 PRJNA904835 45384 274 1.532338 4.19860612 Gammaretrovirus 153135 Viruses Viruses 170 1.0099999999999999e-46   NR NP_057933.2 11801 g45128 i0 95.6 13.7627737226277 90 4 98.5 0 3 272 1165 1254 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 3771 170 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29171833 29171833 PRJNA904835_P_NODE_58449_length_242_cov_0.911243_g58193_i0 PRJNA904835 58449 242 0.911243 2.20520806 Blackberry virus F 2560349 Viruses Viruses 109 1.01e-25   NR XHV14367.1 2560349 g58193 i0 66.3 5.9504132231405 80 27 99.2 0 1 240 1489 1568 XHV14367.1 MAG: polyprotein [Blackberry virus F] diamond 1440 109 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus phirubi
29803093 29803093 PRJNA904835_P_NODE_39611_length_301_cov_2.026316_g39355_i0 PRJNA904835 39611 301 2.026316 6.09921116 Peanut chlorotic streak virus 35593 Viruses Viruses 85.1 8.46e-17   NR NP_042512.1 35593 g39355 i0 53.9 0.887043189368771 89 25 72.8 2 223 5 190 278 NP_042512.1 hypothetical protein [Peanut chlorotic streak virus] diamond 267 85.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Soymovirus Soymovirus virgarachidis
32458844 32458844 PRJNA904835_P_NODE_44079_length_280_cov_1.487923_g43823_i0 PRJNA904835 44079 280 1.487923 4.1661844 Blackberry virus F 2560349 Viruses Viruses 128 4.219999999999999e-32   NR XHV14355.1 2560349 g43823 i0 65.6 5.97857142857143 93 32 99.6 0 1 279 1497 1589 XHV14355.1 MAG: polyprotein [Blackberry virus F] diamond 1674 128 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus phirubi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;