RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA904835" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA904835 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19099001 19099001 PRJNA904835_P_NODE_58035_length_242_cov_0.911243_g57779_i0 PRJNA904835 58035 242 0.911243 2.20520806 Cavenderia fasciculata 261658 Evosea other_Eukaryota 159 3.7899999999999996e-46   NR XP_004361333.1 261658 g57779 i0 91.3 1.98347107438017 80 7 99.2 0 2 241 135 214 XP_004361333.1 myosin light chain kinase [Cavenderia fasciculata] diamond 480 159 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27055987 27055987 PRJNA904835_P_NODE_9962_length_677_cov_1.910596_g9726_i0 PRJNA904835 9962 677 1.910596 12.93473492 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 52.8 2.7e-4   NR KAH3765584.1 1580589 g9726 i0 19 1.09896602658789 248 135 89.1 7 652 50 16 244 KAH3765584.1 hypothetical protein Pelo_2580 [Pelomyxa schiedti] diamond 744 52.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27403672 27403672 PRJNA904835_P_NODE_13143_length_578_cov_6.081188_g12892_i0 PRJNA904835 13143 578 6.081188 35.14926664 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 0.00139   NR XP_004351526.1 1257118 g12892 i0 46.9 0.254325259515571 49 26 25.4 0 55 201 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28666608 28666608 PRJNA904835_P_NODE_27947_length_374_cov_1.016611_g27691_i0 PRJNA904835 27947 374 1.016611 3.80212514 Dictyostelium purpureum 5786 Evosea other_Eukaryota 171 1.11e-48   NR XP_003291358.1 5786 g27691 i0 64.4 0.946524064171123 118 42 94.7 0 373 20 257 374 XP_003291358.1 actin binding protein [Dictyostelium purpureum] diamond 354 171 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29487231 29487231 PRJNA904835_P_NODE_44150_length_280_cov_1.115942_g43894_i0 PRJNA904835 44150 280 1.115942 3.1246376 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.8 1.05e-6   NR XP_004339488.1 1257118 g43894 i0 44.8 0.621428571428571 58 32 62.1 0 245 72 96 153 XP_004339488.1 uncharacterized protein ACA1_062170 [Acanthamoeba castellanii str. Neff] diamond 174 55.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29803084 29803084 PRJNA904835_P_NODE_22091_length_426_cov_9.354108_g21836_i0 PRJNA904835 22091 426 9.354108 39.84850008 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 5.7e-4   NR XP_004351526.1 1257118 g21836 i0 46.9 0.345070422535211 49 26 34.5 0 61 207 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31478128 31478128 PRJNA904835_P_NODE_30016_length_358_cov_3.270175_g29760_i0 PRJNA904835 30016 358 3.270175 11.7072265 Heterostelium album PN5 2086695 Evosea other_Eukaryota 87.4 8.47e-19   NR XP_020430882.1 670386 g29760 i0 56 0.628491620111732 75 33 62.8 0 134 358 3 77 XP_020430882.1 hypothetical protein PPL_08219 [Heterostelium album PN500] diamond 225 87.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31573047 31573047 PRJNA904835_P_NODE_50936_length_251_cov_0.865169_g50680_i0 PRJNA904835 50936 251 0.865169 2.17157419 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 130 1.51e-34   NR XP_012755070.1 1410327 g50680 i0 65.4 0.968127490039841 81 28 96.8 0 244 2 243 323 XP_012755070.1 hypothetical protein SAMD00019534_051450 [Acytostelium subglobosum LB1] diamond 243 130 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;