RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA902848" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA902848 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11085826 11085826 PRJNA902848_P_NODE_7729_length_316_cov_1.185185_g7679_i0 PRJNA902848 7729 316 1.185185 3.7451846 Eukaryota 2759 Fungi Fungi 149 2.39e-44   NR KNE59758.1 578462 g7679 i0 81.5 63.503164556962 81 15 76.9 0 315 73 8 88 KNE59758.1 60S ribosomal protein L37a [Allomyces macrogynus ATCC 38327] diamond 20067 149 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
28635163 28635163 PRJNA902848_P_NODE_15987_length_249_cov_0.886364_g15937_i0 PRJNA902848 15987 249 0.886364 2.20704636 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 47.4 9.51e-4   NR KNE64691.1 578462 g15937 i0 50 1.26506024096386 48 24 57.8 0 239 96 1239 1286 KNE64691.1 hypothetical protein AMAG_10044 [Allomyces macrogynus ATCC 38327] diamond 315 47.4 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;