RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA902848" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA902848 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25107877 25107877 PRJNA902848_P_NODE_11340_length_270_cov_1.187817_g11290_i0 PRJNA902848 11340 270 1.187817 3.2071059 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 3.24e-41   NR XP_044561356.1 5763 g11290 i0 76.4 9.88888888888889 89 21 98.9 0 2 268 53 141 XP_044561356.1 uncharacterized protein FDP41_004542 [Naegleria fowleri] diamond 2670 150 0.993333333333333 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28453207 28453207 PRJNA902848_P_NODE_15006_length_250_cov_0.881356_g14956_i0 PRJNA902848 15006 250 0.881356 2.20339 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 98.6 9.44e-22   NR TPP48805.1 5661 g14956 i0 55.4 7.944 83 37 99.6 0 250 2 888 970 TPP48805.1 Protein kinase domain family protein [Leishmania donovani] diamond 1986 99 0.995959595959596 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani
30592868 30592868 PRJNA902848_P_NODE_11013_length_273_cov_2.035000_g10963_i0 PRJNA902848 11013 273 2.035 5.55555 Acrasis kona 1008807 Heterolobosea other_Eukaryota 52.8 2.51e-6   NR KAL0478226.1 1008807 g10963 i0 35.9 2.6043956043956 78 49 85.7 1 12 245 1 77 KAL0478226.1 stum [Acrasis kona] diamond 711 52.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;