RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA902515" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA902515 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21283152 21283152 PRJNA902515_P_NODE_13617_length_247_cov_1.511494_g13594_i0 PRJNA902515 13617 247 1.511494 3.73339018 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 125 2.45e-32   NR MBX7161971.1 2080302 g13594 i0 80.2 0.983805668016194 81 16 98.4 0 245 3 298 378 MBX7161971.1 cell division protein FtsZ [Acidimicrobiia bacterium] diamond 243 125 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
26620242 26620242 PRJNA902515_P_NODE_11981_length_251_cov_0.876404_g11958_i0 PRJNA902515 11981 251 0.876404 2.19977404 Bacillati 1783272 Bacteria Bacteria 175 8.18e-49   NR MFR0915058.1 28026 g11958 i0 100 32.7370517928287 83 0 99.2 0 249 1 493 575 MFR0915058.1 hypothetical protein [Bifidobacterium pseudocatenulatum] diamond 8217 175 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum
28950848 28950848 PRJNA902515_P_NODE_9248_length_274_cov_1.283582_g9225_i0 PRJNA902515 9248 274 1.283582 3.51701468 Actinomycetota bacterium 2900548 Bacteria Bacteria 152 7.57e-41   NR MSZ47429.1 2900548 g9225 i0 84.4 3.95255474452555 90 14 98.5 0 272 3 466 555 MSZ47429.1 NADH-quinone oxidoreductase subunit L [Actinomycetota bacterium] diamond 1083 152 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29266176 29266176 PRJNA902515_P_NODE_12689_length_250_cov_0.881356_g12666_i0 PRJNA902515 12689 250 0.881356 2.20339 Isoptericola croceus 3031406 Bacteria Bacteria 127 3.1500000000000004e-36   NR WP_277214108.1 3031406 g12666 i0 100 0.768 64 0 76.8 0 248 57 24 87 WP_277214108.1 glycosyl hydrolase-related protein, partial [Isoptericola croceus] diamond 192 127 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola croceus
30751015 30751015 PRJNA902515_P_NODE_14034_length_247_cov_0.896552_g14011_i0 PRJNA902515 14034 247 0.896552 2.21448344 Piscicoccus intestinalis 746033 Bacteria Bacteria 45.8 0.00305   NR WP_068430052.1 746033 g14011 i0 48.8 0.497975708502024 41 21 49.8 0 211 89 205 245 WP_068430052.1 universal stress protein [Piscicoccus intestinalis] diamond 123 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Piscicoccus Piscicoccus intestinalis
32647771 32647771 PRJNA902515_P_NODE_13500_length_248_cov_0.891429_g13477_i0 PRJNA902515 13500 248 0.891429 2.21074392 Actinomyces sp. ICM47 936548 Bacteria Bacteria 177 8.02e-52   NR WP_009647890.1 936548 g13477 i0 100 0.991935483870968 82 0 99.2 0 1 246 216 297 WP_009647890.1 glycosyltransferase [Actinomyces sp. ICM47] diamond 246 177 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. ICM47

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;