RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA900999" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA900999 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27632198 27632198 PRJNA900999_S_NODE_2164_length_267_cov_4.768908_g2108_i0 PRJNA900999 2164 267 4.768908 12.73298436 Eurotatoria 2816136 Rotifera other_Eukaryota 151 3.95e-40   NR CAF0841902.1 433720 g2108 i0 83.1 11.1910112359551 83 14 93.3 0 255 7 2193 2275 CAF0841902.1 unnamed protein product [Adineta steineri] diamond 2988 152 0.993421052631579 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta steineri
28129787 28129787 PRJNA900999_S_NODE_4745_length_200_cov_2.122807_g4689_i0 PRJNA900999 4745 200 2.122807 4.245614 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 63.5 1e-10   NR CAF0713915.1 104777 g4689 i0 80.6 1.08 36 7 54 0 110 3 1 36 CAF0713915.1 unnamed protein product [Brachionus calyciflorus] diamond 216 63.5 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32332423 32332423 PRJNA900999_S_NODE_2679_length_248_cov_2.283105_g2623_i0 PRJNA900999 2679 248 2.283105 5.6621004 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 59.3 3.86e-9   NR CAF5089175.1 2762511 g2623 i0 78.1 0.786290322580645 32 7 38.7 0 246 151 72 103 CAF5089175.1 unnamed protein product, partial [Rotaria sp. Silwood1] diamond 195 59.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;