RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA900999" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA900999 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28255849 28255849 PRJNA900999_S_NODE_5426_length_190_cov_1.981366_g5370_i0 PRJNA900999 5426 190 1.981366 3.7645954 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 67 5.11e-11   NR ETO16984.1 46433 g5370 i0 51.8 0.884210526315789 56 27 88.4 0 168 1 480 535 ETO16984.1 hypothetical protein RFI_20353 [Reticulomyxa filosa] diamond 168 67 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31129724 31129724 PRJNA900999_S_NODE_4075_length_212_cov_4.420765_g4019_i0 PRJNA900999 4075 212 4.420765 9.3720218 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 51.6 1.76e-5   NR ETO30584.1 46433 g4019 i0 52 0.707547169811321 50 24 70.8 0 34 183 59 108 ETO30584.1 putative 39S ribosomal protein L24, mitochondrial [Reticulomyxa filosa] diamond 150 51.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;