RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA900999" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900999 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29392759 29392759 PRJNA900999_S_NODE_9009_length_155_cov_2.944444_g8953_i0 PRJNA900999 9009 155 2.944444 4.5638882 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 76.3 5.89e-15   NR HEY8559731.1 2283092 g8953 i0 67.3 1.89677419354839 49 16 94.8 0 9 155 198 246 HEY8559731.1 polysaccharide biosynthesis/export family protein [Pyrinomonadaceae bacterium] diamond 294 76.3 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30750997 30750997 PRJNA900999_S_NODE_1794_length_285_cov_2.457031_g1738_i0 PRJNA900999 1794 285 2.457031 7.00253835 Blastocatellia bacterium 2052146 Bacteria Bacteria 164 3.51e-48   NR HMV82324.1 2052146 g1738 i0 83.2 2 95 16 100 0 1 285 48 142 HMV82324.1 M20/M25/M40 family metallo-hydrolase [Blastocatellia bacterium] diamond 570 164 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
31067068 31067068 PRJNA900999_S_NODE_4535_length_203_cov_5.724138_g4479_i0 PRJNA900999 4535 203 5.724138 11.62000014 Acidobacteriota bacterium 1978231 Bacteria Bacteria 50.1 3.82e-6   NR MBA2493978.1 1978231 g4479 i0 89.3 0.413793103448276 28 3 41.4 0 117 200 1 28 MBA2493978.1 50S ribosomal protein L30 [Acidobacteriota bacterium] diamond 84 50.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31390779 31390779 PRJNA900999_S_NODE_8056_length_162_cov_3.308271_g8000_i0 PRJNA900999 8056 162 3.308271 5.35939902 Bacteria 2 Bacteria Bacteria 57.8 1.04e-8   NR MCB1023591.1 1978231 g8000 i0 93.3 1.66666666666667 30 2 55.6 0 161 72 113 142 MCB1023591.1 50S ribosomal protein L11 [Acidobacteriota bacterium] diamond 270 57.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;