RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA900028" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA900028 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28097976 28097976 PRJNA900028_P_NODE_139585_length_166_cov_0.871795_g138836_i0 PRJNA900028 139585 166 0.871795 1.4471797 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 54.7 7.76e-7   NR OWZ10206.1 4795 g138836 i0 51 0.885542168674699 49 24 88.6 0 149 3 490 538 OWZ10206.1 Intraflagellar Transport Protein 140 [Phytophthora megakarya] diamond 147 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
29518857 29518857 PRJNA900028_P_NODE_73130_length_188_cov_1.251799_g72381_i0 PRJNA900028 73130 188 1.251799 2.35338212 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0468   NR KAJ8564287.1 4785 g72381 i0 46.7 0.718085106382979 45 18 71.8 1 29 163 173 211 KAJ8564287.1 hypothetical protein ON010_g7058 [Phytophthora cinnamomi] diamond 135 41.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
29960965 29960965 PRJNA900028_P_NODE_175631_length_162_cov_1.805310_g174882_i0 PRJNA900028 175631 162 1.80531 2.9246022 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 54.3 1.01e-6   NR KAH9088249.1 100861 g174882 i0 56.6 0.981481481481482 53 22 96.3 1 161 6 395 447 KAH9088249.1 hypothetical protein LEN26_019599 [Aphanomyces euteiches] diamond 159 54.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30940625 30940625 PRJNA900028_P_NODE_153294_length_164_cov_1.330435_g152545_i0 PRJNA900028 153294 164 1.330435 2.1819134 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 40.8 0.0274   NR KAE9158665.1 53985 g152545 i0 42.2 0.823170731707317 45 26 82.3 0 147 13 24 68 KAE9158665.1 hypothetical protein PF005_g32355 [Phytophthora fragariae] diamond 135 40.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;