RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA900028" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA900028 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8527121 8527121 PRJNA900028_P_NODE_10687_length_341_cov_2.000000_g9939_i0 PRJNA900028 10687 341 2 6.82 Haloplasmataceae bacterium 2862752 Bacteria Bacteria 187 8.32e-54   NR HEY8436531.1 2862752 g9939 i0 81.4 4.97067448680352 113 21 99.4 0 3 341 148 260 HEY8436531.1 oligoendopeptidase F [Haloplasmataceae bacterium] diamond 1695 187 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae   Haloplasmataceae bacterium
17453393 17453393 PRJNA900028_P_NODE_190834_length_161_cov_0.910714_g190085_i0 PRJNA900028 190834 161 0.910714 1.46624954 Bacteria 2 Bacteria Bacteria 70.9 1.46e-12   NR HHW80074.1 1898209 g190085 i0 77.6 14.1801242236025 49 9 91.3 1 159 13 50 96 HHW80074.1 DAK2 domain-containing protein [Acholeplasmataceae bacterium] diamond 2283 70.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
29676454 29676454 PRJNA900028_P_NODE_69390_length_189_cov_2.185714_g68641_i0 PRJNA900028 69390 189 2.185714 4.13099946 Acholeplasma laidlawii 2148 Bacteria Bacteria 59.3 3.57e-9   NR WP_012242891.1 2148 g68641 i0 46.4 3.58730158730159 56 30 88.9 0 22 189 19 74 WP_012242891.1 rRNA maturation RNase YbeY [Acholeplasma laidlawii] diamond 678 59.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
30340672 30340672 PRJNA900028_P_NODE_113452_length_169_cov_1.700000_g112703_i0 PRJNA900028 113452 169 1.7 2.873 Mycoplasma sp. 2108 Bacteria Bacteria 53.1 2.74e-6   NR MCP4336598.1 2108 g112703 i0 49 1.52662721893491 49 24 87 1 152 6 108 155 MCP4336598.1 hypothetical protein [Mycoplasma sp.] diamond 258 53.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.
31319659 31319659 PRJNA900028_P_NODE_143755_length_165_cov_0.879310_g143006_i0 PRJNA900028 143755 165 0.87931 1.4508615 Mycoplasmatales bacterium 2023991 Bacteria Bacteria 89.7 3.46e-19   NR MFV0246844.1 2023991 g143006 i0 72.2 0.981818181818182 54 15 98.2 0 163 2 275 328 MFV0246844.1 class 1b ribonucleoside-diphosphate reductase subunit alpha [Mycoplasmatales bacterium] diamond 162 89.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales     Mycoplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;