RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA898105" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA898105 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27118714 27118714 PRJNA898105_P_NODE_8502_length_226_cov_2.013072_g8302_i0 PRJNA898105 8502 226 2.013072 4.54954272 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 128 1.17e-35   NR WP_294095648.1 527638 g8302 i0 98.4 0.823008849557522 62 1 82.3 0 41 226 29 90 WP_294095648.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase [uncultured Cetobacterium sp.] diamond 186 128 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
27687956 27687956 PRJNA898105_P_NODE_5284_length_267_cov_1.278351_g5084_i0 PRJNA898105 5284 267 1.278351 3.41319717 Cetobacterium sp. 2G large 2759680 Bacteria Bacteria 150 5.82e-41   NR WP_185892595.1 2759680 g5084 i0 77.3 1.97752808988764 88 20 98.9 0 265 2 345 432 WP_185892595.1 multicopper oxidase family protein [Cetobacterium sp. 2G large] diamond 528 150 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. 2G large
27750955 27750955 PRJNA898105_P_NODE_4484_length_281_cov_1.413462_g4284_i0 PRJNA898105 4484 281 1.413462 3.97182822 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 181 4.4099999999999997e-54   NR WP_047393843.1 1339239 g4284 i0 96.8 0.99288256227758 93 3 99.3 0 280 2 191 283 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 279 181 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
27782436 27782436 PRJNA898105_P_NODE_2644_length_362_cov_1.065744_g2444_i0 PRJNA898105 2644 362 1.065744 3.85799328 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 221 2.95e-69   NR WP_047393843.1 1339239 g2444 i0 89.2 0.994475138121547 120 13 99.4 0 2 361 34 153 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 360 221 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
30213549 30213549 PRJNA898105_P_NODE_4412_length_282_cov_1.473684_g4212_i0 PRJNA898105 4412 282 1.473684 4.15578888 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 183 1.5699999999999998e-57   NR WP_047382959.1 1340502 g4212 i0 95.7 0.978723404255319 92 4 97.9 0 6 281 1 92 WP_047382959.1 Dps family protein [Cetobacterium sp. ZWU0022] diamond 276 183 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;