RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA898105" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA898105 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26770907 26770907 PRJNA898105_P_NODE_5881_length_255_cov_1.318681_g5681_i0 PRJNA898105 5881 255 1.318681 3.36263655 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 127 7.27e-32   NR HXH74027.1 2081706 g5681 i0 72.5 0.941176470588235 80 22 94.1 0 241 2 122 201 HXH74027.1 DEAD/DEAH box helicase [Bacteriovoracaceae bacterium] diamond 240 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
26960657 26960657 PRJNA898105_P_NODE_7902_length_243_cov_0.905882_g7702_i0 PRJNA898105 7902 243 0.905882 2.20129326 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 140 2.32e-38   NR MBX3017525.1 2026715 g7702 i0 85.9 0.962962962962963 78 11 96.3 0 2 235 52 129 MBX3017525.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 234 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29171674 29171674 PRJNA898105_P_NODE_4189_length_286_cov_1.305164_g3989_i0 PRJNA898105 4189 286 1.305164 3.73276904 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 173 7.41e-50   NR PZO83259.1 349221 g3989 i0 97.7 0.923076923076923 88 2 92.3 0 1 264 381 468 PZO83259.1 MAG: DNA repair protein RadA [Micavibrio aeruginosavorus] diamond 264 173 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30055577 30055577 PRJNA898105_P_NODE_6231_length_251_cov_0.865169_g6031_i0 PRJNA898105 6231 251 0.865169 2.17157419 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 70.9 2.07e-12   NR MBC7457428.1 2026715 g6031 i0 42.4 1.01593625498008 85 45 98 2 250 5 61 144 MBC7457428.1 SGNH/GDSL hydrolase family protein [Pseudobdellovibrionaceae bacterium] diamond 255 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;